Hs02078402_cn

• Gene Symbol: C9orf139
• Assay Reference Genome Location: Chr.9:137031070 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 401563
• Gene Name: chromosome 9 open reading frame 139
• Gene Aliases: -
• Location: Chr.9:137027464-137037770 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf139	NM_207511.2			NP_997394.1
	AK124899.1			BAC85986.1

Target Gene Details

• Entrez Gene ID: 2529
• Gene Name: fucosyltransferase 7
• Gene Aliases: FucT-VII
• Location: Chr.9:137030174-137032840 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FUT7	NM_004479.3	2	1518	NP_004470.1
	AK313124.1	2	1152
	BC074746.2	2	694	AAH74746.2
	BC086312.1	2	1518	AAH86312.1
	U08112.1	2	806	AAA56869.1
	U11282.1	2	806	AAA20468.1
	X78031.1	2	791	CAA54962.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	LOC101930307 SAPCD2 CLIC3 GRIN1 LRRC26 PTGDS C9orf139 ABCA2 LCNL1 C9orf142 DPP7 MAN1B1-AS1 ENTPD2 FUT7 MIR3621 PRR31 UAP1L1 MAN1B1 NPDC1 TMEM210
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	SAPCD2 TMEM203 ANAPC2 MIR7114 FAM166A C9orf173-AS1 TPRN LCNL1 NOXA1 MAN1B1-AS1 RABL6 C8G PNPLA7 GRIN1 ENTPD8 RNF208 LRRC26 NSMF PTGDS PHPT1 NRARP FBXW5 MAMDC4 NELFB RNF224 FUT7 PRR31 CCDC183-AS1 NPDC1 TMEM210 MIR4292 LCN12 LOC101930307 CLIC3 C9orf172 TUBB4B CCDC183 EDF1 C9orf139 TOR4A ABCA2 C9orf142 DPP7 TRAF2 UAP1L1 SSNA1 MAN1B1 NDOR1 MIR4479 SLC34A3 ENTPD2 MIR3621 STPG3 CYSRT1 EXD3
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	LOC101930307 SAPCD2 CLIC3 PTGDS C9orf139 ABCA2 LCNL1 C9orf142 DPP7 MAN1B1-AS1 ENTPD2 FUT7 PRR31 UAP1L1 C8G MAN1B1 NPDC1 LCN12
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	SAPCD2 INPP5E SDCCAG3 LCN15 CARD9 LCNL1 MAN1B1-AS1 RABL6 C8G C9orf163 FAM69B GRIN1 HSPC324 SNORA17B LRRC26 NOTCH1 PTGDS PHPT1 SNAPC4 LOC100128593 TMEM141 FBXW5 MAMDC4 MIR4674 MIR6722 LINC01451 MIR126 FUT7 SEC16A PRR31 CCDC183-AS1 NPDC1 TMEM210 MIR4292 LCN12 LOC101930307 CLIC3 LCN10 C9orf172 CCDC183 EDF1 DNLZ LCN8 C9orf139 SNHG7 ABCA2 C9orf142 DPP7 AGPAT2 TRAF2 UAP1L1 MAN1B1 SNORA17A MIR4479 PMPCA LCN6 EGFL7 ENTPD2 MIR3621 NALT1 MIR4673
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	LOC101930307 SAPCD2 ANAPC2 GRIN1 LRRC26 C9orf139 DPP7 MAN1B1-AS1 ENTPD2 FUT7 MIR3621 UAP1L1 SSNA1 MAN1B1 NPDC1 TMEM210
nsv616004	Chr.9:137014976 - 137053021 on Build GRCh38	Loss	ABCA2 ENTPD2 FUT7 C9orf139 NPDC1
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	SAPCD2 TMEM203 ANAPC2 FAM166A LCN15 C9orf173-AS1 TPRN LCNL1 MAN1B1-AS1 RABL6 C8G FAM69B GRIN1 HSPC324 SNORA17B RNF208 LRRC26 PTGDS PHPT1 NRARP LOC100128593 TMEM141 FBXW5 MAMDC4 NELFB MIR6722 LINC01451 RNF224 MIR126 FUT7 PRR31 CCDC183-AS1 NPDC1 TMEM210 MIR4292 LCN12 LOC101930307 CLIC3 LCN10 C9orf172 TUBB4B CCDC183 EDF1 LCN8 C9orf139 TOR4A SNHG7 ABCA2 C9orf142 DPP7 AGPAT2 TRAF2 UAP1L1 SSNA1 MAN1B1 NDOR1 SNORA17A MIR4479 LCN6 SLC34A3 EGFL7 ENTPD2 MIR3621 STPG3 CYSRT1 EXD3

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

glycosyltransferase

Gene Ontology Categories:

Process(es)

CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation
leukocyte migration involved in immune response
protein glycosylation
protein N-linked glycosylation
fucosylation
L-fucose catabolic process

Function(s)

fucosyltransferase activity
alpha-(1->3)-fucosyltransferase activity