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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2179656 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02116952_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Exon 18
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 18 3744 NP_065815.1
AB037727.1 10 2881 BAA92544.1
AF451977.1 18 3810 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MIR3177 HAGHL MIR3178 NOXO1 LOC105371184 NARFL TPSAB1 RPS2 SNORA64 NME3 HS3ST6 UBE2I MPG AMDHD2 PRR25 NTHL1 MIR6859-4 GFER DECR2 MIR5587 CCDC78 TRAF7 FAM234A TPSD1 SNORA10 C16orf59 HN1L GNG13 WDR24 PRR35 LMF1 LOC107987233 NME4 ARHGDIG KCTD5 SSTR5-AS1 NPW LOC105371049 WASIR2 SPSB3 GNPTG SLC9A3R2 CRAMP1 C16orf91 LOC105371038 MIR3677 CHTF18 CEMP1 POLR3K ABCA17P LOC652276 MSRB1 JMJD8 LOC106660606 MIR662 MRPS34 HBZ SNRNP25 MIR6768 TMEM204 NDUFB10 FBXL16 PDPK1 SSTR5 LOC729652 PKD1 STUB1 PTX4 CLCN7 HBA2 ERVK13-1 MRPL28 MEIOB LINC00235 MIR3176 LINC00254 HAGH DDX11L10 MIR3180-5 MIR1225 TELO2 BAIAP3 RAB11FIP3 LOC105371045 CAPN15 RPL23AP5 MSLN SYNGR3 UNKL HBQ1 CASKIN1 NTN3 RHBDL1 NHLRC4 MIR940 WFIKKN1 ABCA3 TBC1D24 PIGQ PDIA2 RNPS1 LMF1-AS1 C1QTNF8 LOC105371047 MIR6511B1 DNASE1L2 CCDC154 FLJ42627 MAPK8IP3 CACNA1H RAB26 NUBP2 ATP6V0C TPSB2 IFT140 MLST8 MIR6767 RPUSD1 LOC105371046 AXIN1 RHOT2 TMEM8A TSR3 MIR4717 LOC100134368 METRN SNHG9 LUC7L ECI1 HBM MIR4516 RGS11 SOX8 TPSG1 CCNF WDR90 SNHG19 TBL3 PGP ZNF598 RAB40C IGFALS MCRIP2 FAM173A NPRL3 SNORA78 FAHD1 LOC101929280 PRSS27 LOC107984876 METTL26 LOC100287175 RHBDF1 BRICD5 PRSS29P E4F1 SNORD60 HBA1 RPL3L EME2 RNF151 TSC2
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss MIR1225 MLST8 NPW NOXO1 LOC105371049 SLC9A3R2 MIR4717 MIR3677 SYNGR3 ECI1 MIR4516 CASKIN1 NTHL1 GFER MIR940 ABCA3 LOC106660606 SNHG19 TBL3 TRAF7 PGP ZNF598 RNPS1 MIR6511B1 PKD1 DNASE1L2 RAB26 BRICD5 E4F1 SNORD60 MIR3180-5 TSC2
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss MIR1225 MLST8 TRAF7 PGP LOC105371049 MIR6511B1 PKD1 DNASE1L2 ECI1 MIR4516 CASKIN1 RAB26 BRICD5 E4F1 SNORD60 SNHG19 MIR3180-5 TSC2
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss MLST8 TRAF7 PGP RNPS1 MIR3677 DNASE1L2 ECI1 CASKIN1 RAB26 BRICD5 E4F1 SNORD60 MIR940 LOC106660606 SNHG19
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss MIR1225 TRAF7 MIR4516 CASKIN1 RAB26 LOC105371049 SNORD60 MIR6511B1 SNHG19 MIR3180-5 TSC2 PKD1
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain TRAF7 CASKIN1
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss DNASE1L2 MLST8 ECI1 TRAF7 PGP CASKIN1 RNPS1 BRICD5 E4F1 MIR940 LOC106660606 MIR3677
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR1225 MLST8 MIR6767 MIR3178 LOC105371049 MIR4717 MIR3677 ECI1 CEMP1 AMDHD2 MIR4516 CASKIN1 NTN3 ABCA17P LOC652276 CCNF MIR940 ABCA3 LOC106660606 SNHG19 TBC1D24 TRAF7 PGP MIR6768 C16orf59 RNPS1 PDPK1 MIR6511B1 LOC729652 PKD1 DNASE1L2 RAB26 BRICD5 ATP6V0C E4F1 SNORD60 MIR3180-5 TSC2
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion MLST8 TRAF7 PGP RNPS1 MIR4717 MIR3677 DNASE1L2 ECI1 CASKIN1 RAB26 BRICD5 E4F1 SNORD60 MIR940 ABCA3 LOC106660606 SNHG19

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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