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See other NELFE CNV Assays ›
Gene Symbol
NELFE
Assay Reference Genome
Location

Chr.6:31954301 on build GRCh38
Cytoband
6p21.33
Assay ID Hs02136049_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 7936

Gene Name:

 negative elongation factor complex member E

Gene Aliases:

 D6S45, NELF-E, RD, RDBP, RDP

Location:

 Chr.6:31952087-31959087 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 8 - Exon 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
NELFE NM_002904.5 NP_002895.3
XM_006715205.3 XP_006715268.1
XM_011514913.2 XP_011513215.1
XM_017011299.1 XP_016866788.1
AK300717.1
AK300898.1
AK302652.1
AK303152.1
BC025235.1 AAH25235.1
BC050617.2 AAH50617.1
JQ313904.1
L03411.1 AAC37523.1
X16105.1 CAA34231.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss CYP21A2 HLA-DQB1 PPT2 TNXB HLA-DQA1 MIR6833 ZBTB12 NOTCH4 ATF6B NELFE RNF5 GPSM3 PBX2 AGER NEU1 SNORD48 C4A C4B HLA-DRB1 C2-AS1 C6orf10 HSPA1A FKBPL SKIV2L HSPA1B MIR1236 C2 HLA-DRB6 EGFL8 SNORD52 EHMT2 HLA-DRA BTNL2 PPT2-EGFL8 HLA-DQB1-AS1 C6orf48 STK19 LOC101929163 LOC100507547 CYP21A1P CFB TNXA HCG23 SLC44A4 AGPAT1 HLA-DRB5 DXO PRRT1 MIR6721
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss C2-AS1 FKBPL SKIV2L CYP21A2 MIR1236 C2 EGFL8 PPT2 TNXB MIR6833 PPT2-EGFL8 STK19 NOTCH4 LOC100507547 CYP21A1P ATF6B CFB TNXA NELFE RNF5 GPSM3 PBX2 AGPAT1 AGER DXO PRRT1 MIR6721 C4A C4B
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion LY6G6E SAPCD1-AS1 DDAH2 LY6G6F CYP21A2 LY6G5B GPANK1 HSPA1L PPT2 TNXB NCR3 MIR6833 DDX39B ZBTB12 CLIC1 ABHD16A LTB NOTCH4 ATF6B HCP5 NELFE BAG6 RNF5 MCCD1 GPSM3 C6orf47 APOM ATP6V1G2 PBX2 AGER LOC102725068 LY6G5C NEU1 SNORD48 MIR4646 AIF1 C4A LOC100287329 VWA7 LY6G6D C4B HLA-DRB1 C2-AS1 C6orf10 HSPA1A SAPCD1 FKBPL SKIV2L SNORD117 HSPA1B ATP6V1G2-DDX39B MIR1236 C2 HLA-DRB6 EGFL8 SNORD84 SNORD52 EHMT2 HLA-DRA BTNL2 PPT2-EGFL8 LTA PRRC2A C6orf48 MIR6832 TNF C6orf25 VARS LST1 STK19 LOC101929163 LOC100507547 CYP21A1P CFB TNXA LSM2 NFKBIL1 HCG23 HCG26 SLC44A4 AGPAT1 HLA-DRB5 DDX39B-AS1 SNORA38 CSNK2B DXO MSH5 PRRT1 LY6G6C MICB MIR6721 MSH5-SAPCD1
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion LY6G6E PSMB9 LY6G6F CYP21A2 RING1 HLA-DQB1 HSPA1L TNXB NCR3 MIR3135B ABHD16A LTB VPS52 HCP5 BAG6 MCCD1 GPSM3 C6orf47 APOM HSD17B8 PBX2 AGER LOC102725068 LY6G5C SNORD48 MIR4646 LY6G6D C4B HSPA1A SAPCD1 RXRB SKIV2L DAXX B3GALT4 CUTA C2 HCG24 SNORD52 EHMT2 HLA-DMB BTNL2 PPT2-EGFL8 TAPBP LOC100294145 LTA PRRC2A HLA-DQB1-AS1 C6orf48 MIR6832 TNF C6orf25 LST1 STK19 MIR6834 HLA-DOA TNXA NFKBIL1 HCG23 SLC44A4 AGPAT1 HLA-DRB5 DDX39B-AS1 RPS18 MICB MSH5-SAPCD1 KIFC1 HLA-DQB2 SAPCD1-AS1 DDAH2 LY6G5B GPANK1 HLA-DPB1 PPT2 PPP1R2P1 HLA-DQA1 PSMB8-AS1 PHF1 MIR6833 DDX39B ZBTB12 BRD2 HLA-DOB CLIC1 RGL2 NOTCH4 ATF6B NELFE RNF5 PFDN6 ATP6V1G2 NEU1 SLC39A7 AIF1 C4A LOC100287329 VWA7 HCG25 HLA-DRB1 HLA-DPB2 C2-AS1 C6orf10 FKBPL MIR219A1 WDR46 SNORD117 ZBTB22 HSPA1B PSMB8 MIR5004 ATP6V1G2-DDX39B MIR1236 HLA-DRB6 EGFL8 SNORD84 HLA-DMA HLA-DRA HLA-DPA1 MIR6873 TAP2 HLA-DQA2 VARS LOC101929163 SYNGAP1 LOC100507547 CYP21A1P CFB LSM2 TAP1 ZBTB9 HCG26 SNORA38 CSNK2B COL11A2 DXO MSH5 PRRT1 LY6G6C MIR6721
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss LY6G6E SAPCD1-AS1 DDAH2 LY6G6F CYP21A2 LY6G5B MIR6891 GPANK1 HSPA1L TNXB NCR3 DDX39B ZBTB12 CLIC1 ABHD16A LTB HCP5 NELFE BAG6 MCCD1 C6orf47 APOM ATP6V1G2 LOC102725068 LY6G5C NEU1 SNORD48 MIR4646 AIF1 C4A LOC100287329 VWA7 LY6G6D C4B C2-AS1 HSPA1A SAPCD1 SKIV2L SNORD117 HSPA1B ATP6V1G2-DDX39B MIR1236 C2 SNORD84 SNORD52 EHMT2 HLA-B MICA LTA PRRC2A C6orf48 MIR6832 TNF C6orf25 VARS LST1 STK19 CYP21A1P CFB TNXA LSM2 NFKBIL1 HCG26 SLC44A4 DDX39B-AS1 SNORA38 CSNK2B DXO MSH5 LY6G6C MICB MSH5-SAPCD1
nsv830628 Chr.6:31919777 - 31979823 on Build GRCh38 Loss C2-AS1 STK19 SKIV2L DXO CFB NELFE MIR1236 C2
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion LY6G6E PSMB9 LY6G6F CYP21A2 RING1 HLA-DQB1 HSPA1L TNXB NCR3 MIR3135B ABHD16A LTB VPS52 HCP5 BAG6 MCCD1 GPSM3 C6orf47 APOM HSD17B8 PBX2 AGER LOC102725068 LY6G5C SNORD48 MIR4646 LY6G6D C4B HSPA1A SAPCD1 RXRB SKIV2L DAXX B3GALT4 CUTA C2 HCG24 SNORD52 EHMT2 HLA-DMB BTNL2 PPT2-EGFL8 TAPBP LOC100294145 LTA PRRC2A HLA-DQB1-AS1 C6orf48 MIR6832 TNF C6orf25 LST1 STK19 MIR6834 HLA-DOA TNXA NFKBIL1 HCG23 SLC44A4 AGPAT1 HLA-DRB5 DDX39B-AS1 RPS18 MICB MSH5-SAPCD1 KIFC1 HLA-DQB2 SAPCD1-AS1 DDAH2 LY6G5B GPANK1 HLA-DPB1 PPT2 PPP1R2P1 HLA-DQA1 PSMB8-AS1 PHF1 MIR6833 DDX39B ZBTB12 BRD2 HLA-DOB CLIC1 RGL2 NOTCH4 ATF6B NELFE RNF5 PFDN6 ATP6V1G2 NEU1 SLC39A7 AIF1 C4A LOC100287329 VWA7 HCG25 HLA-DRB1 HLA-DPB2 C2-AS1 C6orf10 FKBPL MIR219A1 WDR46 SNORD117 ZBTB22 HSPA1B PSMB8 MIR5004 ATP6V1G2-DDX39B MIR1236 HLA-DRB6 EGFL8 SNORD84 HLA-DMA HLA-DRA HLA-DPA1 MIR6873 TAP2 HLA-DQA2 VARS LOC101929163 SYNGAP1 LOC100507547 CYP21A1P CFB LSM2 TAP1 ZBTB9 HCG26 SNORA38 CSNK2B COL11A2 DXO MSH5 PRRT1 LY6G6C MIR6721
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss LY6G6E SAPCD1-AS1 DDAH2 LY6G6F CYP21A2 LY6G5B MIR6891 GPANK1 HSPA1L PPT2 TNXB NCR3 MIR6833 DDX39B ZBTB12 CLIC1 ABHD16A LTB NOTCH4 ATF6B HCP5 NELFE BAG6 RNF5 MCCD1 GPSM3 C6orf47 APOM ATP6V1G2 PBX2 AGER LOC102725068 LY6G5C NEU1 SNORD48 MIR4646 AIF1 C4A LOC100287329 VWA7 LY6G6D C4B C2-AS1 C6orf10 HSPA1A SAPCD1 FKBPL SKIV2L SNORD117 HSPA1B ATP6V1G2-DDX39B MIR1236 C2 EGFL8 SNORD84 SNORD52 EHMT2 HLA-DRA HLA-B MICA BTNL2 PPT2-EGFL8 LTA PRRC2A C6orf48 MIR6832 TNF C6orf25 VARS LST1 STK19 LOC101929163 LOC100507547 CYP21A1P CFB TNXA LSM2 NFKBIL1 HCG23 HCG26 SLC44A4 AGPAT1 DDX39B-AS1 SNORA38 CSNK2B DXO MSH5 PRRT1 LY6G6C MICB MIR6721 MSH5-SAPCD1

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