Hs02146977_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140869968 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56139
• Gene Name: protocadherin alpha 10
• Gene Aliases: CNR8, CNRN8, CNRS8, CRNR8, PCDH-ALPHA10
• Location: Chr.5:140855883-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA10	NM_018901.3			NP_061724.1
	NM_031860.2			NP_114066.1
	AF152306.1			AAD43700.1
	AF169689.1			AAF89329.1
	BC130447.1

Target Gene Details

• Entrez Gene ID: 56138
• Gene Name: protocadherin alpha 11
• Gene Aliases: CNR7, CNRN7, CNRS7, CRNR7, PCDH-ALPHA11
• Location: Chr.5:140867513-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA11	NM_018902.4	1	2456	NP_061725.1
	NM_031861.2	1	2456	NP_114067.1
	AF152307.1	1	865	AAD43701.1
	AF152476.1	1	865	AAD43737.1
	AJ007609.1	1	1723	CAC22256.1
	BC136706.1	1	1786

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_031857.1			NP_114063.1
	AF152317.1			AAD43711.1
	AJ007610.1			CAC22257.1
	AK314303.1
	BC104802.1			AAI04803.1
	BC104804.1			AAI04805.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHB14 PCDHGB2 PCDHA10 PCDHGA4 PCDHGA5 PCDHGA3 PCDHB2 PCDHGB1 PCDHGA9 PCDHGA11 SLC25A2 PCDHB4 PCDHAC1 PCDHA2 PCDHA7 PCDHGB3 PCDHA8 PCDHGB6 PCDHGA12 PCDHGB7 PCDHB5 PCDHGA6 PCDHAC2 PCDHA3 PCDHB11 PCDHGA7 PCDHA1 PCDHB6 PCDHGA1 PCDHGB5 LOC101926905 PCDHA5 PCDHB9 PCDHGB8P PCDHA11 PCDHB10 PCDHB1 PCDHB18P PCDHA4 PCDHB13 PCDHA6 PCDHA9 PCDHB7 PCDHGA10 PCDHA13 PCDHB17P PCDHGB4 PCDHB15 PCDHGA2 TAF7 PCDHB19P PCDHB12 PCDHB3 PCDHA12 PCDHB8 PCDHB16 PCDHGA8
dgv1653e212	Chr.5:140839141 - 140874132 on Build GRCh38	Loss	PCDHA8 PCDHA11 PCDHA6 PCDHA9 PCDHA1 PCDHA10 PCDHA2 PCDHA4 PCDHA7 PCDHA5 PCDHA3
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA8 PCDHA11 PCDHA6 PCDHA9 PCDHA1 PCDHA10 PCDHA2 PCDHA4 PCDHA7 PCDHA5 PCDHA3
nsv964955	Chr.5:140869337 - 140871057 on Build GRCh38	Duplication	PCDHA8 PCDHA11 PCDHA6 PCDHA9 PCDHA1 PCDHA10 PCDHA2 PCDHA4 PCDHA7 PCDHA5 PCDHA3
nsv823264	Chr.5:140859236 - 140894831 on Build GRCh38	Gain	PCDHA6 PCDHA9 PCDHA1 PCDHA10 PCDHA2 PCDHA13 PCDHA7 PCDHA5 PCDHA8 PCDHA11 PCDHA4 PCDHA12 PCDHA3

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding