Hs02167331_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140856487 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56139
• Gene Name: protocadherin alpha 10
• Gene Aliases: CNR8, CNRN8, CNRS8, CRNR8, PCDH-ALPHA10
• Location: Chr.5:140855883-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA10	NM_018901.3	1	605	NP_061724.1
	NM_031859.2	1	605	NP_114065.1
	NM_031860.2	1	605	NP_114066.1
	AF152306.1	1	439	AAD43700.1
	AF152475.1	1	439	AAD43736.1
	AF169689.1	1	439	AAF89329.1
	BC130447.1	1	478
	DA503193.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_031857.1			NP_114063.1
	AF152317.1			AAD43711.1
	AJ007610.1			CAC22257.1
	AK314303.1
	BC104802.1			AAI04803.1
	BC104804.1			AAI04805.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA4 PCDHA9 PCDHA10 PCDHA3 PCDHA7 PCDHA1 PCDHA2 PCDHA6 PCDHA5 PCDHA8
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA4 PCDHA9 PCDHA10 PCDHA3 PCDHA7 PCDHA1 PCDHA2 PCDHA6 PCDHA5 PCDHA8
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA4 PCDHA9 PCDHA10 PCDHA3 PCDHA7 PCDHA1 PCDHA2 PCDHA6 PCDHA5 PCDHA8
dgv10101n54	Chr.5:140851652 - 140856743 on Build GRCh38	Loss	PCDHA4 PCDHA9 PCDHA10 PCDHA3 PCDHA7 PCDHA1 PCDHA2 PCDHA6 PCDHA5 PCDHA8
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHB1 PCDHGA12 PCDHB7 PCDHA12 PCDHB12 LOC101926905 PCDHB4 PCDHGA11 PCDHGB3 PCDHAC2 PCDHA4 PCDHA3 PCDHA7 PCDHB2 PCDHGB2 PCDHB3 PCDHB17P PCDHGA1 PCDHB5 PCDHGA5 PCDHGB1 PCDHGA2 PCDHGA9 PCDHB6 PCDHGA10 PCDHGA6 PCDHGA4 PCDHGA7 PCDHA11 PCDHB15 PCDHA6 PCDHGB4 PCDHGA3 PCDHAC1 PCDHB10 PCDHB14 PCDHA2 PCDHGB6 SLC25A2 PCDHA13 PCDHB11 PCDHB13 PCDHB9 PCDHA9 TAF7 PCDHA10 PCDHGB7 PCDHB16 PCDHB19P PCDHGB8P PCDHGB5 PCDHB8 PCDHB18P PCDHGA8 PCDHA1 PCDHA5 PCDHA8
dgv1652e212	Chr.5:140839141 - 140864158 on Build GRCh38	Loss	PCDHA4 PCDHA9 PCDHA10 PCDHA3 PCDHA7 PCDHA1 PCDHA2 PCDHA6 PCDHA5 PCDHA8
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA4 PCDHA9 PCDHA10 PCDHA3 PCDHA7 PCDHA1 PCDHA2 PCDHA11 PCDHA6 PCDHA5 PCDHA8
nsv599894	Chr.5:140852761 - 140864165 on Build GRCh38	Loss	PCDHA4 PCDHA9 PCDHA10 PCDHA3 PCDHA7 PCDHA1 PCDHA2 PCDHA6 PCDHA5 PCDHA8
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA4 PCDHA9 PCDHA10 PCDHA3 PCDHA7 PCDHA1 PCDHA2 PCDHA6 PCDHA5 PCDHA8
esv2421858	Chr.5:140844251 - 140857963 on Build GRCh38	Deletion	PCDHA4 PCDHA9 PCDHA10 PCDHA3 PCDHA7 PCDHA1 PCDHA2 PCDHA6 PCDHA5 PCDHA8
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA4 PCDHA9 PCDHA10 PCDHA3 PCDHA7 PCDHA1 PCDHA2 PCDHA6 PCDHA5 PCDHA8
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA4 PCDHA9 PCDHA10 PCDHA3 PCDHA7 PCDHA1 PCDHA2 PCDHA6 PCDHA5 PCDHA8
esv26168	Chr.5:140842564 - 140859300 on Build GRCh38	Gain	PCDHA4 PCDHA9 PCDHA10 PCDHA3 PCDHA7 PCDHA1 PCDHA2 PCDHA6 PCDHA5 PCDHA8
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA4 PCDHA9 PCDHA10 PCDHA3 PCDHA7 PCDHA1 PCDHA2 PCDHA6 PCDHA5 PCDHA8
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA4 PCDHA9 PCDHA10 PCDHA3 PCDHA7 PCDHA1 PCDHA2 PCDHA6 PCDHA5 PCDHA8
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA4 PCDHA9 PCDHA10 PCDHA3 PCDHA7 PCDHA1 PCDHA2 PCDHA6 PCDHA5 PCDHA8
dgv10105n54	Chr.5:140853365 - 140857963 on Build GRCh38	Loss	PCDHA4 PCDHA9 PCDHA10 PCDHA3 PCDHA7 PCDHA1 PCDHA2 PCDHA6 PCDHA5 PCDHA8
nsv1135376	Chr.5:140849315 - 140859915 on Build GRCh38	Deletion	PCDHA4 PCDHA9 PCDHA10 PCDHA3 PCDHA7 PCDHA1 PCDHA2 PCDHA6 PCDHA5 PCDHA8
nsv599903	Chr.5:140855278 - 140857963 on Build GRCh38	Loss	PCDHA4 PCDHA9 PCDHA10 PCDHA3 PCDHA7 PCDHA1 PCDHA2 PCDHA6 PCDHA5 PCDHA8
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	VTRNA1-3 PCDHA9 PCDHA10 PCDHA11 PCDHA6 HARS VTRNA1-1 ZMAT2 VTRNA1-2 PCDHA4 HARS2 PCDHA3 PCDHA7 PCDHA1 PCDHA2 PCDHA5 PCDHA8
nsv599841	Chr.5:140841349 - 140856513 on Build GRCh38	Loss	PCDHA4 PCDHA9 PCDHA10 PCDHA3 PCDHA7 PCDHA1 PCDHA2 PCDHA6 PCDHA5 PCDHA8
dgv10097n54	Chr.5:140849850 - 140856743 on Build GRCh38	Loss	PCDHA4 PCDHA9 PCDHA10 PCDHA3 PCDHA7 PCDHA1 PCDHA2 PCDHA6 PCDHA5 PCDHA8
esv3890744	Chr.5:140846323 - 140857963 on Build GRCh38	Loss	PCDHA4 PCDHA9 PCDHA10 PCDHA3 PCDHA7 PCDHA1 PCDHA2 PCDHA6 PCDHA5 PCDHA8
esv29977	Chr.5:140843471 - 140856955 on Build GRCh38	Gain	PCDHA4 PCDHA9 PCDHA10 PCDHA3 PCDHA7 PCDHA1 PCDHA2 PCDHA6 PCDHA5 PCDHA8
dgv10098n54	Chr.5:140850785 - 140856743 on Build GRCh38	Loss	PCDHA4 PCDHA9 PCDHA10 PCDHA3 PCDHA7 PCDHA1 PCDHA2 PCDHA6 PCDHA5 PCDHA8
nsv964954	Chr.5:140856140 - 140858351 on Build GRCh38	Duplication	PCDHA4 PCDHA9 PCDHA10 PCDHA3 PCDHA7 PCDHA1 PCDHA2 PCDHA6 PCDHA5 PCDHA8

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding