Genomic Map
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Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SCAF1 | NM_021228.2 | 7 | 1048 | NP_067051.2 |
| XM_005259122.4 | 7 | 1331 | XP_005259179.1 | |
| XM_011527194.2 | 7 | 973 | XP_011525496.1 | |
| XM_017027083.1 | 4 | 775 | XP_016882572.1 | |
| AK024444.1 | 7 | 1048 | ||
| BC011662.2 | AAH11662.2 | |||
| BC053992.1 | 6 | 935 | AAH53992.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss |
 MIR5088
NOSIP
PRRG2
CPT1C
SCAF1
PRMT1
PRR12
IRF3
ADM5
BCL2L12
RRAS
|
| nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss |
MIR5088
NOSIP
PRRG2
CPT1C
SCAF1
PRMT1
PRR12
IRF3
ADM5
BCL2L12
RRAS
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
PTH2
FGF21
CGB3
RPS11
ALDH16A1
TULP2
CARD8
CPT1C
SNAR-A9
CGB8
AKT1S1
MIR4750
MIR6799
FLJ26850
PPP1R15A
GRIN2D
SNAR-C1
SNAR-G1
SYNGR4
GFY
RPL13A
BCL2L12
SPHK2
RRAS
ATF5
ZNF114
ELSPBP1
SNORD35A
SNAR-A1
SNAR-C3
NUCB1-AS1
SNAR-A13
CABP5
IRF3
C19orf73
VRK3
NUP62
SNAR-A4
TRPM4
DHDH
ZNF473
FAM83E
HSD17B14
CGB5
SNAR-C2
SNAR-A6
LHB
NUCB1
HRC
CGB2
IZUMO1
CYTH2
SNRNP70
RPL18
CGB1
SNORD34
CARD8-AS1
SNAR-A2
DBP
SNORD33
MIR4749
SNAR-A10
TSKS
SLC17A7
LOC105447645
PRMT1
SNAR-D
LMTK3
ADM5
RUVBL2
IL4I1
CA11
NTN5
SIGLEC16
SLC6A16
AP2A1
PLEKHA4
C19orf68
SNAR-B1
TBC1D17
PRRG2
KCNJ14
MED25
PLA2G4C
MIR4324
MIR4751
LOC101928295
SNAR-A11
LOC100287477
PRR12
SNORD32A
LIN7B
BCAT2
SNAR-B2
SEC1P
SNAR-A8
SULT2B1
GYS1
PPFIA3
BSPH1
MIR5088
FUT1
CGB7
SNAR-C4
KDELR1
CCDC114
PLA2G4C-AS1
KCNA7
SCAF1
DKKL1
SNAR-A12
SPACA4
LOC101059948
SNAR-A5
FUZ
RCN3
MIR6800
GRWD1
CD37
RASIP1
SNAR-A14
PTOV1-AS1
FTL
MIR6798
SNAR-A3
FUT2
LIG1
NOSIP
LOC105372430
MIR150
PIH1D1
SNAR-C5
TEAD2
MAMSTR
FLT3LG
SNAR-G2
PTOV1
SNAR-A7
PTOV1-AS2
TMEM143
CCDC155
SNORD35B
EMP3
SIGLEC11
PNKP
FCGRT
BAX
NTF4
|
| nsv817854 | Chr.19:49618821 - 49726387 on Build GRCh38 | Gain |
MIR5088
CPT1C
SCAF1
PRMT1
PRR12
IRF3
ADM5
BCL2L12
RRAS
|
| nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss |
SCAF1
IRF3
|
| nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion |
TBC1D17
FUZ
PRRG2
MIR6800
CPT1C
MED25
PTOV1-AS1
AKT1S1
MIR4750
MIR6799
MIR4751
PRR12
BCL2L12
RRAS
NOSIP
ATF5
MIR4749
TSKS
PRMT1
IRF3
ADM5
IL4I1
PTOV1
MIR5088
PTOV1-AS2
SCAF1
PNKP
AP2A1
NUP62
|
| nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain |
MIR5088
NOSIP
PRRG2
CPT1C
SCAF1
PRMT1
PRR12
IRF3
ADM5
BCL2L12
RRAS
|
| nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion |
RPS11
FUZ
RCN3
PRRG2
MIR6800
CPT1C
MED25
PTOV1-AS1
MIR6799
SNORD34
PRR12
SNORD32A
RPL13A
BCL2L12
RRAS
NOSIP
SNORD33
MIR150
SNORD35A
TSKS
PRMT1
IRF3
ADM5
MIR5088
SNORD35B
SCAF1
FCGRT
AP2A1
|
| nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss |
NOSIP
PRRG2
SCAF1
PRMT1
PRR12
IRF3
BCL2L12
RRAS
|
| nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss |
SCAF1
IRF3
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Molecular Function -
RNA metabolism protein
RNA processing factor
RNA splicing factor
nucleic acid metabolism protein
Gene Ontology Categories:
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