Hs02256551_cn

• Gene Symbol: CHST5
• Assay Reference Genome Location: Chr.16:75530361 on build GRCh38
• Cytoband: 16q23.1

Target Gene Details

• Entrez Gene ID: 23563
• Gene Name: carbohydrate sulfotransferase 5
• Gene Aliases: I-GlcNAc-6-ST, I-GlcNAc6ST, glcNAc6ST-3, gn6st-3, hIGn6ST
• Location: Chr.16:75528530-75535170 on Build GRCh38
• Assay Gene Location: Within Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CHST5	NM_024533.4	3	1419	NP_078809.2
	AF246718.1	3	1419	AAG28023.1
	BC147002.1	1	244
	BC147007.1	1	244
	BX282540.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv9461	Chr.16:75502225 - 75542284 on Build GRCh38	Gain	TMEM231 CHST5
nsv442728	Chr.16:75524185 - 75542101 on Build GRCh38	Gain	TMEM231 CHST5
dgv5189n54	Chr.16:75505538 - 75554068 on Build GRCh38	Gain	TMEM231 CHST5
esv3639097	Chr.16:75523984 - 75544656 on Build GRCh38	Loss	TMEM231 CHST5
nsv1063718	Chr.16:75362071 - 75574173 on Build GRCh38	Gain	CFDP1 GABARAPL2 TMEM231 TMEM170A CHST5 CHST6
nsv516675	Chr.16:75494613 - 75538114 on Build GRCh38	Gain+Loss	CHST5 CHST6
dgv54e203	Chr.16:75499773 - 75542100 on Build GRCh38	Gain	TMEM231 CHST5
esv2758657	Chr.16:75385716 - 75543073 on Build GRCh38	Gain	CFDP1 TMEM231 TMEM170A CHST5 CHST6
nsv817738	Chr.16:75524585 - 75538114 on Build GRCh38	Gain	CHST5
nsv1060805	Chr.16:75520124 - 75546223 on Build GRCh38	Gain	TMEM231 CHST5
nsv436838	Chr.16:75504333 - 75539720 on Build GRCh38	Insertion	TMEM231 CHST5
dgv491n67	Chr.16:75504544 - 75546815 on Build GRCh38	Gain	TMEM231 CHST5
dgv352n27	Chr.16:75505987 - 75554068 on Build GRCh38	Gain	TMEM231 CHST5
nsv457521	Chr.16:75453860 - 75570027 on Build GRCh38	Gain	GABARAPL2 TMEM231 TMEM170A CHST5 CHST6
esv2647265	Chr.16:75498133 - 75539570 on Build GRCh38	Deletion	TMEM231 CHST5
esv2714710	Chr.16:75482503 - 75532390 on Build GRCh38	Deletion	CHST5 CHST6
dgv10e24	Chr.16:75524647 - 75546239 on Build GRCh38	Loss	TMEM231 CHST5
nsv572981	Chr.16:75487132 - 75547262 on Build GRCh38	Gain	TMEM231 CHST5 CHST6
nsv1059777	Chr.16:75489056 - 75538815 on Build GRCh38	Loss	TMEM231 CHST5 CHST6
dgv856e212	Chr.16:75501461 - 75546222 on Build GRCh38	Gain	TMEM231 CHST5
nsv572994	Chr.16:75522940 - 75547262 on Build GRCh38	Gain	TMEM231 CHST5
dgv3020n100	Chr.16:75499761 - 75549110 on Build GRCh38	Gain	TMEM231 CHST5
nsv1056522	Chr.16:75505498 - 75542099 on Build GRCh38	Gain+Loss	TMEM231 CHST5
nsv525955	Chr.16:75439434 - 75594447 on Build GRCh38	Loss	GABARAPL2 TMEM231 TMEM170A CHST5 CHST6
nsv1065995	Chr.16:75339858 - 75592129 on Build GRCh38	Loss	CFDP1 GABARAPL2 TMEM231 TMEM170A CHST5 CHST6
dgv5190n54	Chr.16:75514182 - 75549601 on Build GRCh38	Gain	TMEM231 CHST5
dgv124n111	Chr.16:75520136 - 75546219 on Build GRCh38	Duplication	TMEM231 CHST5

More Information

Additional Information:

For this assay, SNP(s) [rs78242641] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

transferase

Gene Ontology Categories:

Process(es)

carbohydrate metabolic process
N-acetylglucosamine metabolic process
protein sulfation
sulfur compound metabolic process
keratan sulfate biosynthetic process

Function(s)

N-acetylglucosamine 6-O-sulfotransferase activity
sulfotransferase activity