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See other MSH5-SAPCD1 CNV Assays ›
Gene Symbol
MSH5-SAPCD1
Assay Reference Genome
Location

Chr.6:31764447 on build GRCh38
Cytoband
6p21.33
Assay ID Hs02277197_cn
Size
Availability Made To Order
Catalog # 4400291
Price 475.00
Your Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 100532732

Gene Name:

 MSH5-SAPCD1 readthrough (NMD candidate)

Gene Aliases:

 MSH5-C6orf26

Location:

 Chr.6:31739948-31764850 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 28 - Exon 29
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
MSH5-SAPCD1 NR_037846.1
AJ245661.1 CAB52406.1
AL122094.1 CAB59262.1

Target Gene Details

Entrez Gene ID:

 401251

Gene Name:

 suppressor APC domain containing 1

Gene Aliases:

 C6orf26, NG23

Location:

 Chr.6:31762996-31764850 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 4 - Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAPCD1 NM_001039651.1 NP_001034740.1
AI765046.1
BC137541.1
BC137542.1
BU162048.1

Target Gene Details

Entrez Gene ID:

 104413891

Gene Name:

 SAPCD1 antisense RNA 1

Gene Aliases:

 C6orf26-AS1

Location:

 Chr.6:31764135-31765588 on Build GRCh38

Assay Gene Location:

 Within Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAPCD1-AS1 NR_126423.1 2 324
BM509003.1 2 331
BU680278.1 1 328

Target Gene Details

Entrez Gene ID:

 80737

Gene Name:

 von Willebrand factor A domain containing 7

Gene Aliases:

 C6orf27, G7c, NG37

Location:

 Chr.6:31764135-31777331 on Build GRCh38

Assay Gene Location:

 Within Exon 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
VWA7 XM_005249427.2 16 4139 XP_005249484.1
XM_017011327.1 15 4174 XP_016866816.1
XM_017011328.1 16 4285 XP_016866817.1
XM_017011329.1 14 3683 XP_016866818.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion VWA7 MCCD1 PBX2 DXO SNORA38 CYP21A1P MSH5-SAPCD1 SKIV2L HCG23 HCG26 ATF6B LY6G6E LST1 LY6G6D ATP6V1G2 HLA-DRB1 HLA-DRA MSH5 PRRT1 ABHD16A PPT2 FKBPL SNORD48 DDX39B ZBTB12 CFB NELFE PPT2-EGFL8 APOM LTA DDX39B-AS1 LY6G5C RNF5 C4B DDAH2 MIR1236 BTNL2 C2-AS1 EHMT2 TNXB CSNK2B NFKBIL1 HCP5 SNORD117 HSPA1A TNF LOC101929163 AGER ATP6V1G2-DDX39B GPANK1 EGFL8 VARS TNXA SNORD84 C6orf25 BAG6 MICB AIF1 SAPCD1-AS1 PRRC2A C2 C4A MIR6832 STK19 AGPAT1 SAPCD1 LTB HLA-DRB6 SLC44A4 LY6G5B C6orf47 C6orf10 MIR6833 LY6G6F LY6G6C NCR3 NEU1 GPSM3 LSM2 LOC100287329 HLA-DRB5 LOC100507547 HSPA1L HSPA1B CLIC1 MIR6721 MIR4646 C6orf48 NOTCH4 LOC102725068 CYP21A2 SNORD52
esv2763547 Chr.6:31748105 - 31770701 on Build GRCh38 Loss VWA7 SAPCD1-AS1 MSH5-SAPCD1 MSH5 SAPCD1
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion PBX2 DXO HCG24 SNORA38 SLC39A7 HCG23 HCG26 LST1 PSMB9 HLA-DOA TAPBP HLA-DRA HLA-DQA1 PRRT1 ABHD16A PPT2 B3GALT4 FKBPL SNORD48 DDX39B ZBTB12 NELFE LTA DDX39B-AS1 LY6G5C HLA-DOB C4B COL11A2 MIR1236 C2-AS1 HSD17B8 CSNK2B HCG25 HSPA1A TNF RING1 PHF1 LOC101929163 AGER ATP6V1G2-DDX39B EGFL8 PFDN6 SYNGAP1 C6orf25 KIFC1 MICB SAPCD1-AS1 C2 C4A MIR6832 STK19 SAPCD1 LTB VPS52 HLA-DPA1 SLC44A4 LY6G5B C6orf47 C6orf10 LY6G6F RPS18 LY6G6C NCR3 NEU1 GPSM3 HLA-DQB1 LOC100507547 HSPA1B CLIC1 MIR6721 NOTCH4 MIR6834 VWA7 MCCD1 PSMB8-AS1 HLA-DPB1 CYP21A1P MSH5-SAPCD1 SKIV2L ATF6B LY6G6E LY6G6D HLA-DQB1-AS1 ATP6V1G2 HLA-DRB1 MSH5 DAXX MIR5004 ZBTB22 CFB PPT2-EGFL8 APOM CUTA HLA-DMB RNF5 RXRB HLA-DQA2 DDAH2 BRD2 BTNL2 TAP2 EHMT2 TNXB NFKBIL1 HCP5 SNORD117 MIR219A1 HLA-DPB2 PPP1R2P1 GPANK1 MIR6873 LOC100294145 VARS TNXA SNORD84 BAG6 AIF1 ZBTB9 PRRC2A AGPAT1 MIR3135B HLA-DRB6 HLA-DMA MIR6833 PSMB8 LSM2 RGL2 LOC100287329 HLA-DRB5 HSPA1L MIR4646 C6orf48 HLA-DQB2 WDR46 TAP1 LOC102725068 CYP21A2 SNORD52
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss VWA7 MCCD1 DXO SNORA38 CYP21A1P MSH5-SAPCD1 SKIV2L HCG26 LY6G6E LST1 LY6G6D ATP6V1G2 MSH5 ABHD16A SNORD48 DDX39B ZBTB12 CFB NELFE MIR6891 APOM LTA DDX39B-AS1 LY6G5C C4B DDAH2 MIR1236 C2-AS1 EHMT2 TNXB CSNK2B NFKBIL1 HCP5 SNORD117 HSPA1A TNF ATP6V1G2-DDX39B GPANK1 HLA-B VARS TNXA SNORD84 C6orf25 BAG6 MICB AIF1 SAPCD1-AS1 PRRC2A C2 C4A MIR6832 STK19 SAPCD1 LTB SLC44A4 LY6G5B C6orf47 LY6G6F LY6G6C NCR3 NEU1 LSM2 LOC100287329 HSPA1L HSPA1B CLIC1 MIR4646 MICA C6orf48 LOC102725068 CYP21A2 SNORD52
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion PBX2 DXO HCG24 SNORA38 SLC39A7 HCG23 HCG26 LST1 PSMB9 HLA-DOA TAPBP HLA-DRA HLA-DQA1 PRRT1 ABHD16A PPT2 B3GALT4 FKBPL SNORD48 DDX39B ZBTB12 NELFE LTA DDX39B-AS1 LY6G5C HLA-DOB C4B COL11A2 MIR1236 C2-AS1 HSD17B8 CSNK2B HCG25 HSPA1A TNF RING1 PHF1 LOC101929163 AGER ATP6V1G2-DDX39B EGFL8 PFDN6 SYNGAP1 C6orf25 KIFC1 MICB SAPCD1-AS1 C2 C4A MIR6832 STK19 SAPCD1 LTB VPS52 HLA-DPA1 SLC44A4 LY6G5B C6orf47 C6orf10 LY6G6F RPS18 LY6G6C NCR3 NEU1 GPSM3 HLA-DQB1 LOC100507547 HSPA1B CLIC1 MIR6721 NOTCH4 MIR6834 VWA7 MCCD1 PSMB8-AS1 HLA-DPB1 CYP21A1P MSH5-SAPCD1 SKIV2L ATF6B LY6G6E LY6G6D HLA-DQB1-AS1 ATP6V1G2 HLA-DRB1 MSH5 DAXX MIR5004 ZBTB22 CFB PPT2-EGFL8 APOM CUTA HLA-DMB RNF5 RXRB HLA-DQA2 DDAH2 BRD2 BTNL2 TAP2 EHMT2 TNXB NFKBIL1 HCP5 SNORD117 MIR219A1 HLA-DPB2 PPP1R2P1 GPANK1 MIR6873 LOC100294145 VARS TNXA SNORD84 BAG6 AIF1 ZBTB9 PRRC2A AGPAT1 MIR3135B HLA-DRB6 HLA-DMA MIR6833 PSMB8 LSM2 RGL2 LOC100287329 HLA-DRB5 HSPA1L MIR4646 C6orf48 HLA-DQB2 WDR46 TAP1 LOC102725068 CYP21A2 SNORD52
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss VWA7 MCCD1 PBX2 DXO SNORA38 CYP21A1P MSH5-SAPCD1 SKIV2L HCG23 HCG26 ATF6B LY6G6E LST1 LY6G6D ATP6V1G2 HLA-DRA MSH5 PRRT1 ABHD16A PPT2 FKBPL SNORD48 DDX39B ZBTB12 CFB NELFE MIR6891 PPT2-EGFL8 APOM LTA DDX39B-AS1 LY6G5C RNF5 C4B DDAH2 MIR1236 BTNL2 C2-AS1 EHMT2 TNXB CSNK2B NFKBIL1 HCP5 SNORD117 HSPA1A TNF LOC101929163 AGER ATP6V1G2-DDX39B GPANK1 HLA-B EGFL8 VARS TNXA SNORD84 C6orf25 BAG6 MICB AIF1 SAPCD1-AS1 PRRC2A C2 C4A MIR6832 STK19 AGPAT1 SAPCD1 LTB SLC44A4 LY6G5B C6orf47 C6orf10 MIR6833 LY6G6F LY6G6C NCR3 NEU1 GPSM3 LSM2 LOC100287329 LOC100507547 HSPA1L HSPA1B CLIC1 MIR6721 MIR4646 MICA C6orf48 NOTCH4 LOC102725068 CYP21A2 SNORD52

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More Information


Set Membership:

 Intragenic Exonic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

DNA metabolism protein

Gene Ontology Categories:

Function(s) Process(es)


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