Name: [Hs02278974_cn] [B3GNTL1]
Creator: Thermo Fisher Scientific
Keywords: [B3GNTL1] Assay, [UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1] Assay

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	146712
Gene Name:	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1
Gene Aliases:	3-Gn-T8, B3GNT8, BGnT-8, beta-1, beta3Gn-T8, beta3GnTL1
Location:	Chr.17:82942149-83051845 on Build GRCh38
Assay Gene Location:	Within Exon 20

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
B3GNTL1	NM_001009905.2	13	2583	NP_001009905.1
	NM_001320742.1	14	2701	NP_001307671.1
	NM_001320743.1	9	3178	NP_001307672.1
	NR_135465.1	14	2938
	NR_135466.1	10	2010
	AK054757.1	10	2010
	BU623325.1	1	453

Target Gene Details

Entrez Gene ID:	6904
Gene Name:	tubulin folding cofactor D
Gene Aliases:	SSD-1, tfcD
Location:	Chr.17:82752048-82943186 on Build GRCh38
Assay Gene Location:	Within Exon 56

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TBCD	NM_005993.4	39	3837	NP_005984.3
	XM_005256396.4	38	3802	XP_005256453.1
	XM_005256399.4	27	2634	XP_005256456.1
	XM_005256404.4	27	2676	XP_005256461.1
	XM_006722290.2	38	3734	XP_006722353.1
	XM_006722291.3	27	2958	XP_006722354.1
	XM_006722292.2	25	2370	XP_006722355.1
	XM_011523589.1	34	3377	XP_011521891.1
	XM_011523590.1	34	3458	XP_011521892.1
	XM_011523591.1	34	3362	XP_011521893.1
	XM_011523593.1	33	2969	XP_011521895.1
	XM_011523594.1	26	2439	XP_011521896.1
	XM_011523595.2	26	2517	XP_011521897.1
	XM_011523597.2	24	3170	XP_011521899.1
	XM_011523598.1	24	2228	XP_011521900.1
	XM_011523599.2	24	2946	XP_011521901.1
	XM_011523600.2	25	2390	XP_011521902.1
	XM_017024987.1	39	3698	XP_016880476.1
	XM_017024989.1	23	2084	XP_016880478.1
	XM_017024990.1	27	2456	XP_016880479.1
	AA421669.1	2	200
	AB023205.1	39	3816
	AF193042.1	7	1813	AAG22470.1
	AJ006417.1	40	3861	CAA07022.1
	AK057975.1	20	1715
	AK091959.1	27	2469	BAC03777.1
	AK129619.1	2	1269	BAC85197.1
	AL133562.1	35	3282	CAB63716.1
	BC003094.1	39	3837	AAH03094.1
	BC012824.2	12	1294	AAH12824.2
	BC039654.1	25	2190	AAH39654.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1067553	Chr.17:82530808 - 83091923 on Build GRCh38	Loss	LOC105376791 B3GNTL1 RAB40B ZNF750 FOXK2 FN3K WDR45B METRNL LOC105371944 MIR4525 TBCD FN3KRP LOC101929552
dgv3296n100	Chr.17:82851564 - 83091923 on Build GRCh38	Gain	METRNL LOC105371944 TBCD B3GNTL1
nsv428351	Chr.17:81152631 - 83064073 on Build GRCh38	Gain	SLC16A3 CSNK1D PYCR1 SECTM1 PCYT2 FASN ZNF750 FAAP100 CCDC57 RFNG RAC3 MYADML2 WDR45B ACTG1 MAFG TSPAN10 GPS1 NPB P4HB HEXDC TMEM105 SNORD134 C17orf62 PDE6G LOC105371925 OXLD1 NPLOC4 B3GNTL1 RAB40B SLC38A10 STRA13 ASPSCR1 LOC101929511 C17orf89 BAHCC1 UTS2R FN3KRP LOC105376790 AATK CD7 LOC105376791 GCGR LRRC45 FN3K ALYREF DUS1L MIR4525 TBCD ANAPC11 MIR6786 LOC100130370 CCDC137 FSCN2 MCRIP1 TEPSIN OGFOD3 HGS NARF MIR6787 NOTUM CEP131 MRPL12 SLC25A10 TEX19 FOXK2 ARHGDIA MIR3186 MAFG-AS1 MIR4740 LOC105371944 SIRT7 PPP1R27 AATK-AS1 LOC101929552 DCXR ARL16 LINC00482
nsv576217	Chr.17:82937869 - 82960820 on Build GRCh38	Loss	LOC105371944 TBCD B3GNTL1
dgv3297n100	Chr.17:82879855 - 83048753 on Build GRCh38	Gain	LOC105371944 TBCD B3GNTL1
esv3893052	Chr.17:82895301 - 83102003 on Build GRCh38	Gain	METRNL LOC105371944 TBCD B3GNTL1
nsv1057153	Chr.17:82876571 - 83091923 on Build GRCh38	Loss	METRNL LOC105371944 TBCD B3GNTL1
esv21913	Chr.17:81828123 - 83103548 on Build GRCh38	Gain+Loss	SLC16A3 CSNK1D PYCR1 SECTM1 PCYT2 FASN ZNF750 CCDC57 RFNG RAC3 MYADML2 WDR45B METRNL MAFG GPS1 NPB P4HB HEXDC SNORD134 C17orf62 B3GNTL1 RAB40B STRA13 ASPSCR1 LOC101929511 UTS2R FN3KRP LOC105376790 CD7 LOC105376791 LRRC45 FN3K ALYREF DUS1L MIR4525 TBCD ANAPC11 MCRIP1 OGFOD3 NARF MIR6787 NOTUM TEX19 FOXK2 ARHGDIA MAFG-AS1 LOC105371944 SIRT7 PPP1R27 LOC101929552 DCXR