Hs02279058_cn

• Gene Symbol: ATP5J2-PTCD1
• Assay Reference Genome Location: Chr.7:99456589 on build GRCh38
• Cytoband: 7q22.1

Target Gene Details

• Entrez Gene ID: 100526740
• Gene Name: ATP5J2-PTCD1 readthrough
• Gene Aliases: -
• Location: Chr.7:99416739-99466201 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
ATP5J2-PTCD1	NM_001198879.1			NP_001185808.1
	AK295912.1

Target Gene Details

• Entrez Gene ID: 10898
• Gene Name: cleavage and polyadenylation specific factor 4
• Gene Aliases: CPSF30, NAR, NEB-1, NEB1
• Location: Chr.7:99438920-99457377 on Build GRCh38
• Assay Gene Location: Within Exon 9

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CPSF4	NM_001081559.2	8	967	NP_001075028.1
	NM_001318160.1	8	964	NP_001305089.1
	NM_001318161.1	7	873	NP_001305090.1
	NM_001318162.1	8	942	NP_001305091.1
	NM_006693.3	8	1042	NP_006684.1
	XM_011515755.2	8	1061	XP_011514057.1
	XM_011515756.2	8	985	XP_011514058.1
	XM_011515757.2	8	984	XP_011514059.1
	XM_017011700.1	7	3294	XP_016867189.1
	XM_017011701.1	7	3279	XP_016867190.1
	XM_017011702.1	9	987	XP_016867191.1
	XM_017011703.1	8	881	XP_016867192.1
	AK301745.1	8	897
	BC003101.1	8	882	AAH03101.1
	BC050738.1	8	927	AAH50738.1
	BE388179.1
	BM787372.1	2	288
	BQ052009.1	8	929
	BQ641871.1	1	130
	BX358595.2
	U79569.1	8	935	AAD00321.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv831069	Chr.7:99350505 - 99529961 on Build GRCh38	Loss	ZKSCAN5 ATP5J2-PTCD1 ARPC1A ATP5J2 CPSF4 BUD31 ZNF394 ZNF789 PDAP1 ARPC1B PTCD1
nsv951383	Chr.7:99449178 - 99457377 on Build GRCh38	Deletion	ATP5J2-PTCD1 CPSF4

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

RNA metabolism protein, RNA splicing factor

Gene Ontology Categories:

Process(es)

tRNA splicing, via endonucleolytic cleavage and ligation
mRNA processing
modification by virus of host mRNA processing

Function(s)

protein binding
zinc ion binding
poly(A) RNA binding