Hs02285530_cn

• Gene Symbol: TFPT
• Assay Reference Genome Location: Chr.19:54108065 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 29844
• Gene Name: TCF3 fusion partner
• Gene Aliases: FB1, INO80F, amida
• Location: Chr.19:54107013-54115675 on Build GRCh38
• Assay Gene Location: Within Exon 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TFPT	NM_001321792.1	5	615	NP_001308721.1
	NM_013342.3	5	1009	NP_037474.1
	XM_005278261.1	4	485	XP_005278318.1
	AF052052.1	6	882	AAD45182.1
	BC004281.1	5	641	AAH04281.1
	BC007776.2	5	627	AAH07776.1
	BQ027375.1	2	215

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1056177	Chr.19:54073048 - 54112306 on Build GRCh38	Gain	NDUFA3 TARM1 OSCAR TFPT
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	PRPF31 NDUFA3 TARM1 VSTM1 OSCAR TFPT
nsv515623	Chr.19:54102901 - 54179150 on Build GRCh38	Loss	MBOAT7 PRPF31 NDUFA3 CNOT3 TMC4 LENG1 TFPT
nsv953613	Chr.19:54097214 - 54198733 on Build GRCh38	Deletion	MBOAT7 PRPF31 NDUFA3 CNOT3 TMC4 OSCAR LENG1 TSEN34 TFPT
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	MIR512-2 DPRX ZNF525 CNOT3 TARM1 MIR518A2 ZNF813 MIR520B LENG1 VN1R4 MIR525 LILRA5 MIR524 MIR1283-1 ZNF665 MIR520H TMC4 CACNG7 MIR519A2 MIR371A MIR520F ZNF765 LILRB3 LILRB2 PRKCG MIR519C MIR515-1 ZNF761 MIR516B2 MIR517C MIR371B MIR935 MIR517A MIR522 MIR518F MIR518E MIR518A1 LOC105372457 MIR1323 MIR520D LOC284379 MIR519D MIR512-1 MIR518D NLRP12 MIR527 MIR519B MIR526A2 MIR526A1 MIR526B MBOAT7 ZNF331 CACNG6 MIR515-2 VN1R2 ZNF677 MIR4752 OSCAR RPS9 MIR523 LILRB5 MIR520G MIR516B1 MIR516A1 MIR498 MIR516A2 MIR520C MYADM NDUFA3 BIRC8 MIR1283-2 MIR519E TSEN34 TFPT MIR519A1 MIR521-1 MIR517B MIR518B MIR518C ZNF845 FAM90A27P MIR521-2 PRPF31 TPM3P9 VSTM1 MIR372 CACNG8 MIR520E LILRA6 MIR520A ZNF818P MIR373
nsv470157	Chr.19:54063999 - 54127773 on Build GRCh38	Loss	PRPF31 NDUFA3 TARM1 OSCAR TFPT
esv3893246	Chr.19:54081109 - 54111207 on Build GRCh38	Gain	NDUFA3 TARM1 OSCAR TFPT
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	CACNG8 PRPF31 NDUFA3 CACNG6 TARM1 VSTM1 MIR935 OSCAR TFPT

More Information

Additional Information:

For this assay, SNP(s) [rs140973668] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

DNA repair
DNA recombination
transcription, DNA-templated
regulation of transcription, DNA-templated
male gonad development
positive regulation of apoptotic process
apoptotic signaling pathway

Function(s)

DNA binding
protein binding
protein heterodimerization activity