Genomic Map
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Target Gene Details
Entrez Gene ID: | 171389 |
Gene Name: | NLR family pyrin domain containing 6 |
Gene Aliases: |
AVR, CLR11.4, NALP6, NAVR, NAVR/AVR, PAN3, PYPAF5 |
Location: |
Chr.11:278365-285942 on Build GRCh38 |
Assay Gene Location: | Within Exon 4 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| NLRP6 | NM_001276700.1 | 4 | 540 | NP_001263629.1 |
| NM_138329.2 | 4 | 540 | NP_612202.2 | |
| XM_011519931.1 | 4 | 745 | XP_011518233.1 | |
| XM_017017252.1 | 4 | 745 | XP_016872741.1 | |
| XM_017017253.1 | 1 | 224 | XP_016872742.1 | |
| AF479748.1 | 4 | 540 | AAL87105.1 | |
| AK292668.1 | 4 | 745 | ||
| AY154461.1 | 4 | 540 | AAO18157.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| esv32593 | Chr.11:218394 - 285937 on Build GRCh38 | Loss |
 NLRP6
SIRT3
PSMD13
|
| esv3891905 | Chr.11:269147 - 336332 on Build GRCh38 | Gain |
NLRP6
IFITM5
IFITM2
PGGHG
IFITM1
IFITM3
|
| nsv552765 | Chr.11:199256 - 320836 on Build GRCh38 | Gain |
NLRP6
MIR6743
ODF3
BET1L
IFITM5
SIRT3
IFITM2
RIC8A
PSMD13
PGGHG
IFITM1
IFITM3
|
| dgv1505n54 | Chr.11:198510 - 470331 on Build GRCh38 | Gain |
NLRP6
ODF3
BET1L
SIRT3
RIC8A
PSMD13
PTDSS2
PGGHG
IFITM1
SIGIRR
MIR6743
PKP3
IFITM5
IFITM2
B4GALNT4
IFITM3
ANO9
|
| nsv482153 | Chr.11:278570 - 285303 on Build GRCh38 | Gain |
NLRP6
|
| nsv552766 | Chr.11:248181 - 285936 on Build GRCh38 | Loss |
NLRP6
PSMD13
|
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Additional Information:
For this assay, SNP(s) [rs76744706] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Gene Ontology Categories:
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