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See other TRIM39 CNV Assays ›
Gene Symbol
TRIM39
Assay Reference Genome
Location

Chr.6:30335828 on build GRCh38
Cytoband
6p22.1
Assay ID Hs02307157_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 56658

Gene Name:

 tripartite motif containing 39

Gene Aliases:

 RNF23, TFP, TRIM39B

Location:

 Chr.6:30326844-30343729 on Build GRCh38

Assay Gene Location:

 Within Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRIM39 NM_021253.3 5 945 NP_067076.2
NM_172016.2 5 1259 NP_742013.1
AB046381.1 4 800 BAB16374.1
AK292512.1 5 862
AX776007.1 5 825 CAE11703.1
BC007661.2 5 816 AAH07661.1
BC034985.1 5 1232 AAH34985.1
BT007370.1 3 633 AAP36034.1

Target Gene Details

Entrez Gene ID:

 202658

Gene Name:

 TRIM39-RPP21 readthrough

Gene Aliases:

 TRIM39R

Location:

 Chr.6:30329311-30346858 on Build GRCh38

Assay Gene Location:

 Within Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRIM39-RPP21 NM_001199119.1 3 640 NP_001186048.1
AI805914.1
EU012025.1 3 369

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion HLA-B ZNRD1ASP HCG20 HCG8 TUBB PSORS1C1 PPP1R10 PSORS1C3 TRIM26 OR2H2 MIR4640 HLA-C MUC22 HCG18 OR2H1 SNORD32B MDC1-AS1 PPP1R11 HLA-G DPCR1 MAS1L SFTA2 TRIM31 UBD POU5F1 CCHCR1 TCF19 NRM MIR877 C6orf15 OR2J2 TRIM10 DHX16 HLA-F HCG9 PRR3 TRIM15 TRIM39-RPP21 MUC21 HCG4B DDR1 ABCF1 HCG17 HLA-F-AS1 HCG22 CDSN TRIM40 MICA RNF39 PSORS1C2 OR11A1 MIR6891 OR5V1 HCG27 ZNRD1 TRIM39 LOC105375014 HLA-A RPP21 OR14J1 LINC01015 TRIM31-AS1 MDC1 HCG4 C6orf136 ATAT1 OR12D2 OR10C1 LINC00243 MRPS18B HLA-E IER3 LOC101929006 GTF2H4 OR12D3 VARS2 ZFP57 HLA-H GNL1 HLA-K LOC554223 IFITM4P HLA-J PPP1R18 MOG FLOT1 GABBR1 HLA-L
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion ZNRD1ASP HCG20 HCG8 TUBB PSORS1C1 PPP1R10 PSORS1C3 HCG14 TRIM26 OR2H2 MIR4640 MUC22 OR2J3 HCG18 LINC01556 OR2H1 SNORD32B MDC1-AS1 PPP1R11 HLA-G DPCR1 MAS1L SFTA2 TRIM31 UBD POU5F1 CCHCR1 TCF19 LOC100129636 NRM MIR877 C6orf15 OR2J2 TRIM10 DHX16 HLA-F HCG9 TRIM27 PRR3 TRIM15 TRIM39-RPP21 MUC21 HCG4B DDR1 ABCF1 HCG17 HLA-F-AS1 OR2W1 HCG22 CDSN TRIM40 RNF39 PSORS1C2 OR11A1 LINC00533 OR5V1 HCG27 ZNRD1 TRIM39 LOC105375014 HLA-A LINC01623 RPP21 OR14J1 ZNF311 LINC01015 TRIM31-AS1 MDC1 HCG4 C6orf136 OR2B3 ATAT1 OR12D2 OR10C1 LINC00243 MRPS18B HLA-E IER3 LOC101929006 GTF2H4 OR12D3 VARS2 ZFP57 HLA-H GNL1 HLA-K LOC554223 IFITM4P HLA-J PPP1R18 HCG16 MOG FLOT1 GABBR1 HLA-L
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion ZNRD1ASP HCG20 HCG8 TUBB PSORS1C1 PPP1R10 PSORS1C3 TRIM26 MIR4640 HLA-C MUC22 HCG18 MDC1-AS1 PPP1R11 HLA-G DPCR1 SFTA2 TRIM31 POU5F1 CCHCR1 TCF19 NRM MIR877 C6orf15 TRIM10 DHX16 HLA-F HCG9 PRR3 TRIM15 TRIM39-RPP21 MUC21 HCG4B DDR1 ABCF1 HCG17 HLA-F-AS1 HCG22 CDSN TRIM40 RNF39 PSORS1C2 HCG27 ZNRD1 TRIM39 LOC105375014 HLA-A RPP21 TRIM31-AS1 MDC1 HCG4 C6orf136 ATAT1 LINC00243 MRPS18B HLA-E IER3 GTF2H4 VARS2 HLA-H GNL1 HLA-K LOC554223 IFITM4P HLA-J PPP1R18 FLOT1 HLA-L
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss ZNRD1ASP HCG20 HCG8 TUBB PSORS1C1 PPP1R10 PSORS1C3 TRIM26 MIR4640 HLA-C MUC22 HCG18 MDC1-AS1 PPP1R11 DPCR1 SFTA2 TRIM31 POU5F1 CCHCR1 TCF19 NRM MIR877 C6orf15 TRIM10 DHX16 HCG9 PRR3 TRIM15 TRIM39-RPP21 MUC21 HCG4B DDR1 ABCF1 HCG17 HCG22 CDSN TRIM40 RNF39 PSORS1C2 HCG27 ZNRD1 TRIM39 LOC105375014 HLA-A RPP21 TRIM31-AS1 MDC1 C6orf136 ATAT1 LINC00243 MRPS18B HLA-E IER3 GTF2H4 VARS2 HLA-H GNL1 HLA-K HLA-J PPP1R18 FLOT1 HLA-L
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication HCG26 HLA-B ZNRD1ASP HCG20 HCG8 TUBB PSORS1C1 PPP1R10 PSORS1C3 TRIM26 MIR4640 HLA-C MUC22 HCG18 MDC1-AS1 PPP1R11 DPCR1 SFTA2 TRIM31 POU5F1 CCHCR1 TCF19 NRM MIR877 C6orf15 TRIM10 LOC102725068 DHX16 PRR3 TRIM15 TRIM39-RPP21 MUC21 DDR1 ABCF1 HCG17 HCG22 CDSN TRIM40 MICA RNF39 PSORS1C2 MIR6891 HCG27 ZNRD1 TRIM39 LOC105375014 RPP21 TRIM31-AS1 MDC1 C6orf136 ATAT1 LINC00243 MRPS18B HCP5 HLA-E IER3 GTF2H4 VARS2 GNL1 HLA-J PPP1R18 FLOT1 HLA-L
nsv5241 Chr.6:30333124 - 30367656 on Build GRCh38 Insertion TRIM39 RPP21 TRIM39-RPP21

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