Genomic Map
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Target Gene Details
Entrez Gene ID: | 199990 |
Gene Name: | Fanconi anemia core complex associated protein 20 |
Gene Aliases: |
C1orf86, FP7162 |
Location: |
Chr.1:2184460-2212720 on Build GRCh38 |
Assay Gene Location: | Within Exon 16 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| FAAP20 | NM_001146310.1 | 8 | 1515 | NP_001139782.1 |
| NM_001256945.1 | 3 | 645 | NP_001243874.1 | |
| NM_001282671.1 | 8 | 1596 | NP_001269600.1 | |
| NM_001282672.1 | 7 | 1465 | NP_001269601.1 | |
| NM_001282673.1 | 4 | 781 | NP_001269602.1 | |
| XM_017000554.1 | 4 | 756 | XP_016856043.1 | |
| XM_017000555.1 | XP_016856044.1 | |||
| XM_017000556.1 | XP_016856045.1 | |||
| AF469129.1 | 8 | 1562 | AAP97719.1 | |
| AK055593.1 | 7 | 1465 | BAB70965.1 | |
| AK127994.1 | 8 | 1515 | BAC87220.1 | |
| BG825658.1 | ||||
| BU192678.1 | 3 | 606 |
Target Gene Details
Entrez Gene ID: | 5590 |
Gene Name: | protein kinase C zeta |
Gene Aliases: |
PKC-ZETA, PKC2 |
Location: |
Chr.1:2050470-2185395 on Build GRCh38 |
Assay Gene Location: | Within Exon 28 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| PRKCZ | NM_001033581.1 | 15 | 1948 | NP_001028753.1 |
| NM_001033582.1 | 15 | 1845 | NP_001028754.1 | |
| NM_001242874.1 | 15 | 1955 | NP_001229803.1 | |
| NM_002744.4 | 18 | 2160 | NP_002735.3 | |
| XM_017001790.1 | 18 | 2180 | XP_016857279.1 | |
| XM_017001791.1 | 15 | 1805 | XP_016857280.1 | |
| XM_017001796.1 | 15 | 1985 | XP_016857285.1 | |
| XM_017001798.1 | 15 | 1898 | XP_016857287.1 | |
| XM_017001799.1 | 15 | 2282 | XP_016857288.1 | |
| XM_017001801.1 | 13 | 1602 | XP_016857290.1 | |
| XM_017001804.1 | 15 | 2068 | XP_016857293.1 | |
| XM_017001805.1 | 15 | 2038 | XP_016857294.1 | |
| AK097627.1 | 13 | 1581 | ||
| AK131526.1 | 8 | 1695 | ||
| BC008058.2 | 18 | 2107 | AAH08058.1 | |
| BC014270.2 | 18 | 2160 | AAH14270.1 | |
| Z15108.1 | 18 | 1981 | CAA78813.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv461727 | Chr.1:2151050 - 2251031 on Build GRCh38 | Loss |
 LOC105378592
PRKCZ
FAAP20
LOC100506504
SKI
|
| nsv482937 | Chr.1:10001 - 2368561 on Build GRCh38 | Loss |
CDK11B
LOC105378948
LOC284600
TMEM240
CCNL2
FAM132A
LOC148413
MIR6726
LOC100506504
SCNN1D
LOC107984841
LOC100132287
LINC01342
MIR6727
LOC100288175
FAM138A
LOC100287934
MTND1P23
MIR1302-2
NADK
LOC107985728
DDX11L1
MXRA8
TTLL10
FAM87B
CPTP
MIR429
LINC00115
DVL1
CDK11A
LOC105378947
ATAD3A
SDF4
MMP23B
MIR200A
LOC107985729
MIR6723
ACAP3
OR4F16
TTLL10-AS1
FNDC10
MORN1
LOC100288069
MIB2
MTND2P28
TNFRSF18
GNB1
LOC102724312
LOC102725121
PLEKHN1
KLHL17
MMP23A
FAM41C
LOC100133331
CFAP74
AGRN
MRPL20
MIR6808
SSU72
TNFRSF4
MIR6859-2
CALML6
CPSF3L
B3GALT6
NOC2L
SLC35E2
LINC01128
FAAP20
LOC729737
LOC101928626
ATAD3B
LOC105378589
LOC100134822
LOC100130417
MIR200B
TAS1R3
SKI
HES4
OR4F5
RNF223
WASH7P
SAMD11
PERM1
AURKAIP1
GABRD
TMEM52
LOC105378591
OR4F29
LOC105378949
LOC100129534
ATAD3C
TMEM88B
LOC105378592
C1orf159
PUSL1
MIR6859-1
SLC35E2B
VWA1
ISG15
UBE2J2
PRKCZ
ANKRD65
|
| nsv951530 | Chr.1:2153662 - 2229961 on Build GRCh38 | Deletion |
LOC105378592
PRKCZ
FAAP20
LOC100506504
SKI
|
| nsv834557 | Chr.1:2117631 - 2311104 on Build GRCh38 | Loss |
LOC105378592
PRKCZ
FAAP20
LOC100506504
SKI
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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