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Gene Symbol
GPT
Assay Reference Genome
Location

Chr.8:144504619 on build GRCh38
Cytoband
8q24.3
Assay ID Hs02350388_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2875

Gene Name:

 glutamic--pyruvic transaminase

Gene Aliases:

 AAT1, ALT1, GPT1

Location:

 Chr.8:144502217-144507174 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 2 - Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
GPT NM_005309.2 NP_005300.1
XM_011516993.2 XP_011515295.1
AK225562.1
AK298488.1
AK303779.1
BC018207.1 AAH18207.1
BP275218.1
BT006992.1 AAP35638.1
D10355.1 BAA01186.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv470249 Chr.8:143889098 - 144519234 on Build GRCh38 Loss SMPD5 SPATC1 SLC52A2 GPAA1 MIR6893 LOC101928902 MIR6848 MIR6847 SCX ADCK5 MFSD3 TONSL VPS28 FBXL6 MAF1 BOP1 CPSF1 LOC101928953 CYC1 SCRT1 SHARPIN GRINA MROH1 MIR6846 MIR939 EXOSC4 GPT HGH1 MIR6849 PPP1R16A KIFC2 TMEM249 SLC39A4 LRRC14 FOXH1 DGAT1 PLEC HSF1 MIR661 MIR7112 RECQL4 MIR1234 WDR97 PARP10 OPLAH CYHR1 TONSL-AS1
nsv612951 Chr.8:144479830 - 144677692 on Build GRCh38 Loss MFSD3 LRRC14 ARHGAP39 C8orf82 LRRC24 GPT LOC101928953 RECQL4 PPP1R16A
esv3619130 Chr.8:144500159 - 144504908 on Build GRCh38 Gain GPT LOC101928953 PPP1R16A
nsv831489 Chr.8:144342140 - 144544026 on Build GRCh38 Loss ARHGAP39 SLC52A2 MIR6893 LOC101928902 ADCK5 MFSD3 TONSL VPS28 FBXL6 LRRC24 CPSF1 LOC101928953 MIR939 C8orf82 GPT MIR6849 PPP1R16A KIFC2 TMEM249 SLC39A4 LRRC14 FOXH1 RECQL4 MIR1234 CYHR1 TONSL-AS1
dgv1207n67 Chr.8:144498396 - 144532417 on Build GRCh38 Gain MFSD3 LRRC14 ARHGAP39 C8orf82 LRRC24 GPT LOC101928953 RECQL4 PPP1R16A
dgv12439n54 Chr.8:144438306 - 144525122 on Build GRCh38 Loss MFSD3 LRRC14 FOXH1 TONSL LRRC24 GPT LOC101928953 RECQL4 PPP1R16A KIFC2 CYHR1 TONSL-AS1
dgv907n27 Chr.8:144416180 - 144525122 on Build GRCh38 Loss GPT PPP1R16A MIR6893 KIFC2 SLC39A4 MFSD3 LRRC14 FOXH1 TONSL VPS28 LRRC24 LOC101928953 RECQL4 CYHR1 TONSL-AS1
dgv12442n54 Chr.8:144492696 - 144516381 on Build GRCh38 Loss MFSD3 GPT LOC101928953 RECQL4 PPP1R16A
dgv12434n54 Chr.8:144270080 - 144516801 on Build GRCh38 Loss SLC52A2 MIR6893 LOC101928902 MIR6848 ADCK5 MFSD3 TONSL VPS28 FBXL6 BOP1 CPSF1 LOC101928953 SCRT1 MIR939 GPT MIR6849 PPP1R16A KIFC2 TMEM249 SLC39A4 FOXH1 DGAT1 HSF1 RECQL4 MIR1234 CYHR1 TONSL-AS1
dgv12443n54 Chr.8:144502322 - 144518490 on Build GRCh38 Loss MFSD3 LRRC14 GPT LOC101928953 RECQL4
nsv515809 Chr.8:143904439 - 144519234 on Build GRCh38 Gain+Loss SMPD5 SPATC1 SLC52A2 GPAA1 MIR6893 LOC101928902 MIR6848 MIR6847 SCX ADCK5 MFSD3 TONSL VPS28 FBXL6 MAF1 BOP1 CPSF1 LOC101928953 CYC1 SCRT1 SHARPIN GRINA MROH1 MIR6846 MIR939 EXOSC4 GPT HGH1 MIR6849 PPP1R16A KIFC2 TMEM249 SLC39A4 LRRC14 FOXH1 DGAT1 PLEC HSF1 MIR661 MIR7112 RECQL4 MIR1234 WDR97 PARP10 OPLAH CYHR1 TONSL-AS1
nsv612940 Chr.8:144436292 - 144613673 on Build GRCh38 Loss ARHGAP39 C8orf82 GPT PPP1R16A KIFC2 MFSD3 LRRC14 FOXH1 TONSL LRRC24 LOC101928953 RECQL4 CYHR1 TONSL-AS1
nsv428208 Chr.8:144041826 - 144722291 on Build GRCh38 Gain ARHGAP39 SMPD5 SPATC1 SLC52A2 GPAA1 MIR6893 LOC101928902 MIR6848 MIR6847 SCX ADCK5 MFSD3 TONSL VPS28 FBXL6 MAF1 BOP1 LRRC24 CPSF1 LOC101928953 CYC1 SCRT1 SHARPIN MROH1 MIR6846 MIR939 ZNF251 EXOSC4 C8orf82 GPT HGH1 MIR6849 PPP1R16A KIFC2 TMEM249 SLC39A4 LRRC14 FOXH1 DGAT1 HSF1 MIR7112 RECQL4 MIR1234 WDR97 OPLAH CYHR1 TONSL-AS1
esv29999 Chr.8:144456732 - 144525122 on Build GRCh38 Loss MFSD3 LRRC14 FOXH1 LRRC24 GPT LOC101928953 RECQL4 PPP1R16A KIFC2 CYHR1

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More Information


Additional Information:

For this assay, SNP(s) [rs112827945] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

transaminase

Gene Ontology Categories:

Function(s) Process(es)


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