Hs02425984_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140852710 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_014005.4	1	4939	NP_054724.1
	NM_031857.1			NP_114063.1
	AB002343.1	1	4939
	AF152317.1			AAD43711.1
	AJ007610.1			CAC22257.1
	AK314303.1
	BC104802.1			AAI04803.1
	BC104804.1			AAI04805.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA9 PCDHA5 PCDHA6 PCDHA7 PCDHA2 PCDHA3 PCDHA4 PCDHA10 PCDHA1 PCDHA8
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA9 PCDHA5 PCDHA6 PCDHA7 PCDHA2 PCDHA3 PCDHA4 PCDHA10 PCDHA1 PCDHA8
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA9 PCDHA5 PCDHA6 PCDHA7 PCDHA2 PCDHA3 PCDHA4 PCDHA10 PCDHA1 PCDHA8
dgv10101n54	Chr.5:140851652 - 140856743 on Build GRCh38	Loss	PCDHA9 PCDHA5 PCDHA6 PCDHA7 PCDHA2 PCDHA3 PCDHA4 PCDHA10 PCDHA1 PCDHA8
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHGB8P LOC101926905 PCDHA13 PCDHB13 PCDHGA6 PCDHGA10 PCDHGB2 PCDHAC2 PCDHB6 PCDHA5 PCDHA6 PCDHA7 PCDHB1 PCDHGA3 PCDHGA9 PCDHGB3 PCDHB11 PCDHB18P SLC25A2 PCDHB14 PCDHGA5 PCDHGB4 PCDHA10 TAF7 PCDHGA7 PCDHB16 PCDHB5 PCDHA9 PCDHGB5 PCDHB7 PCDHB9 PCDHB10 PCDHGA12 PCDHB12 PCDHGA11 PCDHGA4 PCDHB2 PCDHGA2 PCDHGB1 PCDHGB7 PCDHB19P PCDHA3 PCDHA1 PCDHB3 PCDHGA8 PCDHGA1 PCDHA2 PCDHGB6 PCDHAC1 PCDHA4 PCDHA12 PCDHB8 PCDHA8 PCDHB17P PCDHA11 PCDHB4 PCDHB15
dgv1652e212	Chr.5:140839141 - 140864158 on Build GRCh38	Loss	PCDHA9 PCDHA5 PCDHA6 PCDHA7 PCDHA2 PCDHA3 PCDHA4 PCDHA10 PCDHA1 PCDHA8
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA9 PCDHA5 PCDHA6 PCDHA11 PCDHA7 PCDHA2 PCDHA3 PCDHA4 PCDHA10 PCDHA1 PCDHA8
nsv515909	Chr.5:140848414 - 140852761 on Build GRCh38	Loss	PCDHA9 PCDHA5 PCDHA6 PCDHA7 PCDHA2 PCDHA3 PCDHA4 PCDHA1 PCDHA8
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA9 PCDHA5 PCDHA6 PCDHA7 PCDHA2 PCDHA3 PCDHA4 PCDHA10 PCDHA1 PCDHA8
esv2421858	Chr.5:140844251 - 140857963 on Build GRCh38	Deletion	PCDHA9 PCDHA5 PCDHA6 PCDHA7 PCDHA2 PCDHA3 PCDHA4 PCDHA10 PCDHA1 PCDHA8
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA9 PCDHA5 PCDHA6 PCDHA7 PCDHA2 PCDHA3 PCDHA4 PCDHA10 PCDHA1 PCDHA8
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA9 PCDHA5 PCDHA6 PCDHA7 PCDHA2 PCDHA3 PCDHA4 PCDHA10 PCDHA1 PCDHA8
dgv10096n54	Chr.5:140847633 - 140852761 on Build GRCh38	Loss	PCDHA9 PCDHA5 PCDHA6 PCDHA7 PCDHA2 PCDHA3 PCDHA4 PCDHA1 PCDHA8
esv26168	Chr.5:140842564 - 140859300 on Build GRCh38	Gain	PCDHA9 PCDHA5 PCDHA6 PCDHA7 PCDHA2 PCDHA3 PCDHA4 PCDHA10 PCDHA1 PCDHA8
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA9 PCDHA5 PCDHA6 PCDHA7 PCDHA2 PCDHA3 PCDHA4 PCDHA10 PCDHA1 PCDHA8
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA9 PCDHA5 PCDHA6 PCDHA7 PCDHA2 PCDHA3 PCDHA4 PCDHA10 PCDHA1 PCDHA8
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA9 PCDHA5 PCDHA6 PCDHA7 PCDHA2 PCDHA3 PCDHA4 PCDHA10 PCDHA1 PCDHA8
nsv1135376	Chr.5:140849315 - 140859915 on Build GRCh38	Deletion	PCDHA9 PCDHA5 PCDHA6 PCDHA7 PCDHA2 PCDHA3 PCDHA4 PCDHA10 PCDHA1 PCDHA8
esv2657537	Chr.5:140850410 - 140855957 on Build GRCh38	Deletion	PCDHA9 PCDHA5 PCDHA6 PCDHA7 PCDHA2 PCDHA3 PCDHA4 PCDHA10 PCDHA1 PCDHA8
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	HARS PCDHA9 VTRNA1-2 PCDHA2 PCDHA4 PCDHA8 ZMAT2 PCDHA5 PCDHA6 PCDHA11 PCDHA7 VTRNA1-1 VTRNA1-3 HARS2 PCDHA3 PCDHA10 PCDHA1
nsv599841	Chr.5:140841349 - 140856513 on Build GRCh38	Loss	PCDHA9 PCDHA5 PCDHA6 PCDHA7 PCDHA2 PCDHA3 PCDHA4 PCDHA10 PCDHA1 PCDHA8
dgv10097n54	Chr.5:140849850 - 140856743 on Build GRCh38	Loss	PCDHA9 PCDHA5 PCDHA6 PCDHA7 PCDHA2 PCDHA3 PCDHA4 PCDHA10 PCDHA1 PCDHA8
esv3890744	Chr.5:140846323 - 140857963 on Build GRCh38	Loss	PCDHA9 PCDHA5 PCDHA6 PCDHA7 PCDHA2 PCDHA3 PCDHA4 PCDHA10 PCDHA1 PCDHA8
esv29977	Chr.5:140843471 - 140856955 on Build GRCh38	Gain	PCDHA9 PCDHA5 PCDHA6 PCDHA7 PCDHA2 PCDHA3 PCDHA4 PCDHA10 PCDHA1 PCDHA8
dgv10098n54	Chr.5:140850785 - 140856743 on Build GRCh38	Loss	PCDHA9 PCDHA5 PCDHA6 PCDHA7 PCDHA2 PCDHA3 PCDHA4 PCDHA10 PCDHA1 PCDHA8

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding