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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2181573 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02428107_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 17 - Exon 18
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 NP_065815.1
AB037727.1 BAA92544.1
AF451977.1 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication NTN3 GNG13 ABCA3 TPSD1 RHBDF1 METTL26 PRSS27 MRPL28 MPG LOC107984876 PRSS29P RGS11 ARHGDIG TPSAB1 CLCN7 PRR25 LINC00235 NHLRC4 AMDHD2 CCDC154 STUB1 BAIAP3 RHBDL1 TBC1D24 CRAMP1 PDIA2 WDR90 SSTR5-AS1 MIR4516 UNKL CEMP1 KCTD5 MIR3677 MRPS34 HS3ST6 CCNF MCRIP2 LMF1 MIR6767 WDR24 LOC101929280 LOC105371049 SNORA64 PDPK1 NPW PTX4 CHTF18 DECR2 RAB11FIP3 ZNF598 NME4 NPRL3 LOC100287175 IGFALS GNPTG HBQ1 NDUFB10 MLST8 EME2 TRAF7 TPSB2 CAPN15 TBL3 C16orf59 SNRNP25 LMF1-AS1 SLC9A3R2 FAM173A RAB26 HBA2 HAGH PRR35 FAHD1 LUC7L C16orf91 MIR940 MIR662 ABCA17P TMEM8A MIR6859-4 SPSB3 SYNGR3 RPL3L NME3 MIR3177 NTHL1 PKD1 GFER LOC107987233 LOC729652 TSR3 SNHG19 DNASE1L2 HBM TSC2 SNORD60 RNPS1 RPS2 BRICD5 NARFL DDX11L10 HN1L LOC652276 C1QTNF8 PGP MEIOB MAPK8IP3 LOC100134368 MIR5587 MIR3178 LOC105371046 HBZ MSRB1 RNF151 TMEM204 POLR3K ECI1 NUBP2 UBE2I LOC106660606 MSLN TELO2 CACNA1H ATP6V0C RAB40C SSTR5 TPSG1 SNHG9 FLJ42627 LINC00254 JMJD8 LOC105371038 RHOT2 IFT140 ERVK13-1 SNORA10 MIR6768 WASIR2 HAGHL SNORA78 E4F1 MIR4717 WFIKKN1 METRN MIR1225 NOXO1 AXIN1 HBA1 RPL23AP5 PIGQ MIR3180-5 CASKIN1 LOC105371045 MIR3176 CCDC78 FAM234A FBXL16 LOC105371184 SOX8 MIR6511B1 RPUSD1 LOC105371047
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss MIR4516 ABCA3 MIR3677 MIR940 ECI1 LOC106660606 SYNGR3 NTHL1 PKD1 GFER LOC105371049 NPW E4F1 MIR4717 MIR1225 NOXO1 ZNF598 SNHG19 DNASE1L2 MIR3180-5 CASKIN1 TSC2 SNORD60 RNPS1 BRICD5 MLST8 TRAF7 TBL3 PGP MIR6511B1 SLC9A3R2 RAB26
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss MIR4516 MIR1225 SNHG19 DNASE1L2 MIR3180-5 CASKIN1 TSC2 ECI1 SNORD60 BRICD5 MLST8 TRAF7 PGP MIR6511B1 PKD1 LOC105371049 RAB26 E4F1
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss SNHG19 DNASE1L2 CASKIN1 MIR3677 MIR940 ECI1 SNORD60 RNPS1 LOC106660606 BRICD5 MLST8 TRAF7 PGP RAB26 E4F1
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss MIR4516 TRAF7 MIR1225 SNHG19 MIR6511B1 MIR3180-5 CASKIN1 TSC2 PKD1 LOC105371049 SNORD60 RAB26
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain TRAF7 CASKIN1
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss MLST8 TRAF7 PGP DNASE1L2 CASKIN1 MIR3677 MIR940 ECI1 RNPS1 LOC106660606 BRICD5 E4F1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain NTN3 MIR4516 ABCA3 CEMP1 MIR3677 MIR940 ABCA17P ECI1 LOC106660606 CCNF ATP6V0C MIR6767 PKD1 MIR6768 LOC105371049 LOC729652 PDPK1 E4F1 MIR4717 MIR1225 SNHG19 DNASE1L2 AMDHD2 MIR3180-5 CASKIN1 TSC2 SNORD60 RNPS1 BRICD5 MLST8 TRAF7 LOC652276 C16orf59 PGP TBC1D24 MIR6511B1 MIR3178 RAB26
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion MIR4717 ABCA3 SNHG19 DNASE1L2 CASKIN1 MIR3677 MIR940 ECI1 SNORD60 RNPS1 LOC106660606 BRICD5 MLST8 TRAF7 PGP RAB26 E4F1

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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