Hs02429612_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140836716 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Overlaps Exon 1 - Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	NM_031852.1			NP_114040.1
	AF152315.1			AAD43709.1
	AF152485.1			AAD43746.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHGA9 PCDHGB4 PCDHB9 PCDHA6 PCDHB6 PCDHGB2 PCDHGB8P PCDHB18P PCDHGA7 PCDHB14 PCDHGA1 PCDHA3 PCDHGB6 PCDHGB5 PCDHA5 TAF7 PCDHA7 LOC101926905 PCDHB8 PCDHGA3 PCDHA9 PCDHAC2 PCDHA12 PCDHB19P PCDHGA2 PCDHGA5 SLC25A2 PCDHB16 PCDHA4 PCDHGA12 PCDHA13 PCDHGA8 PCDHB10 PCDHB12 PCDHA1 PCDHB4 PCDHGB3 PCDHB17P PCDHGA4 PCDHB15 PCDHB5 PCDHAC1 PCDHGA6 PCDHA10 PCDHA2 PCDHGA10 PCDHGB1 PCDHB3 PCDHB13 PCDHGA11 PCDHA8 PCDHB1 PCDHA11 PCDHB11 PCDHB7 PCDHB2 PCDHGB7
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	VTRNA1-3 ZMAT2 PCDHA6 HARS VTRNA1-2 PCDHA4 PCDHA7 PCDHA10 VTRNA1-1 PCDHA2 PCDHA3 HARS2 PCDHA9 PCDHA1 PCDHA8 PCDHA5 PCDHA11
nsv10752	Chr.5:140834209 - 140841559 on Build GRCh38	Gain+Loss	PCDHA3 PCDHA6 PCDHA1 PCDHA4 PCDHA7 PCDHA8 PCDHA5 PCDHA2
esv2861013	Chr.5:140834461 - 140848573 on Build GRCh38	Duplication	PCDHA3 PCDHA6 PCDHA9 PCDHA1 PCDHA4 PCDHA7 PCDHA8 PCDHA5 PCDHA2
esv2730838	Chr.5:140828071 - 140841422 on Build GRCh38	Deletion	PCDHA3 PCDHA6 PCDHA1 PCDHA4 PCDHA7 PCDHA8 PCDHA5 PCDHA2
esv8310	Chr.5:140807123 - 140841552 on Build GRCh38	Loss	PCDHA3 PCDHA6 PCDHA1 PCDHA4 PCDHA7 PCDHA8 PCDHA5 PCDHA2
esv3606957	Chr.5:140836164 - 140842460 on Build GRCh38	Gain	PCDHA3 PCDHA6 PCDHA1 PCDHA4 PCDHA7 PCDHA8 PCDHA5 PCDHA2
dgv970n67	Chr.5:140784829 - 140843644 on Build GRCh38	Gain	PCDHA3 PCDHA6 PCDHA1 PCDHA4 PCDHA7 PCDHA8 PCDHA5 PCDHA2
nsv436885	Chr.5:140835434 - 140846096 on Build GRCh38	Insertion	PCDHA3 PCDHA6 PCDHA1 PCDHA4 PCDHA7 PCDHA8 PCDHA5 PCDHA2
dgv10092n54	Chr.5:140835344 - 140850785 on Build GRCh38	Loss	PCDHA3 PCDHA6 PCDHA9 PCDHA1 PCDHA4 PCDHA7 PCDHA8 PCDHA5 PCDHA2
nsv1024237	Chr.5:140810775 - 140852242 on Build GRCh38	Loss	PCDHA3 PCDHA6 PCDHA9 PCDHA1 PCDHA4 PCDHA7 PCDHA8 PCDHA5 PCDHA2
esv27071	Chr.5:140836128 - 140842469 on Build GRCh38	Loss	PCDHA3 PCDHA6 PCDHA1 PCDHA4 PCDHA7 PCDHA8 PCDHA5 PCDHA2

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding