Genomic Map
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Target Gene Details
Entrez Gene ID: | 10016 |
Gene Name: | programmed cell death 6 |
Gene Aliases: |
ALG-2, ALG2, PEF1B |
Location: |
Chr.5:271621-314974 on Build GRCh38 |
Assay Gene Location: | Overlaps - Exon 1 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| PDCD6 | NM_001267556.1 | NP_001254485.1 | ||
| NM_001267557.1 | NP_001254486.1 | |||
| NM_001267558.1 | NP_001254487.1 | |||
| NM_001267559.1 | NP_001254488.1 | |||
| NM_013232.3 | NP_037364.1 | |||
| NR_073609.1 | ||||
| AF035606.1 | AAC27697.1 | |||
| AK001917.1 | ||||
| AK223366.1 | BAD97086.1 | |||
| AK295082.1 | ||||
| AK308872.1 | ||||
| AK310347.1 | ||||
| AK315370.1 | ||||
| BC012384.1 | AAH12384.1 | |||
| BC050597.1 | AAH50597.1 | |||
| BC106706.2 | AAI06707.1 | |||
| BC110291.1 | AAI10292.1 | |||
| BG390506.1 | ||||
| BI553617.1 | ||||
| CR983268.1 | ||||
| DB495449.1 | ||||
| U58773.1 | AAF14336.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| esv2759315 | Chr.5:17263 - 595840 on Build GRCh38 | Loss |
 PLEKHG4B
AHRR
PDCD6
LRRC14B
SLC9A3
SDHA
PP7080
HRAT5
EXOC3
MIR4456
CCDC127
LOC100288152
EXOC3-AS1
|
| esv3894107 | Chr.5:81322 - 801057 on Build GRCh38 | Gain |
TPPP
PLEKHG4B
ZDHHC11B
AHRR
PDCD6
ZDHHC11
LRRC14B
SLC9A3
SDHA
PP7080
HRAT5
EXOC3
MIR4456
LOC100996325
CCDC127
LOC101929895
CEP72
LOC100288152
EXOC3-AS1
|
| nsv428458 | Chr.5:93781 - 338972 on Build GRCh38 | Loss |
HRAT5
PLEKHG4B
AHRR
PDCD6
CCDC127
LRRC14B
SDHA
|
| esv2752083 | Chr.5:28951 - 346521 on Build GRCh38 | Gain |
HRAT5
PLEKHG4B
AHRR
PDCD6
CCDC127
LRRC14B
SDHA
|
| nsv518607 | Chr.5:141544 - 305917 on Build GRCh38 | Gain |
HRAT5
PLEKHG4B
AHRR
PDCD6
CCDC127
LRRC14B
SDHA
|
| nsv1030767 | Chr.5:154674 - 457840 on Build GRCh38 | Gain |
HRAT5
PLEKHG4B
EXOC3
AHRR
PDCD6
CCDC127
LRRC14B
SDHA
EXOC3-AS1
|
| nsv1018482 | Chr.5:192727 - 276085 on Build GRCh38 | Loss |
HRAT5
PDCD6
CCDC127
LRRC14B
SDHA
|
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Additional Information:
For this assay, SNP(s) [rs115979486] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic
Non-exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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