Hs02521562_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140858408 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56139
• Gene Name: protocadherin alpha 10
• Gene Aliases: CNR8, CNRN8, CNRS8, CRNR8, PCDH-ALPHA10
• Location: Chr.5:140855883-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA10	NM_018901.3			NP_061724.1
	NM_031859.2	1	2526	NP_114065.1
	NM_031860.2			NP_114066.1
	AF152306.1			AAD43700.1
	AF152475.1	1	2360	AAD43736.1
	AF169689.1			AAF89329.1
	BC130447.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_031857.1			NP_114063.1
	AF152317.1			AAD43711.1
	AJ007610.1			CAC22257.1
	AK314303.1
	BC104802.1			AAI04803.1
	BC104804.1			AAI04805.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA4 PCDHA7 PCDHA3 PCDHA1 PCDHA2 PCDHA5 PCDHA6 PCDHA8 PCDHA9 PCDHA10
nsv442962	Chr.5:140844251 - 140864171 on Build GRCh38	Loss	PCDHA4 PCDHA7 PCDHA3 PCDHA1 PCDHA2 PCDHA5 PCDHA6 PCDHA8 PCDHA9 PCDHA10
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA4 PCDHA7 PCDHA3 PCDHA1 PCDHA2 PCDHA5 PCDHA6 PCDHA8 PCDHA9 PCDHA10
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA4 PCDHA7 PCDHA3 PCDHA1 PCDHA2 PCDHA5 PCDHA6 PCDHA8 PCDHA9 PCDHA10
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA4 PCDHA7 PCDHA3 PCDHA1 PCDHA2 PCDHA5 PCDHA6 PCDHA8 PCDHA9 PCDHA10
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA4 PCDHA7 PCDHA3 PCDHA1 PCDHA2 PCDHA5 PCDHA6 PCDHA8 PCDHA9 PCDHA10
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA4 PCDHA7 PCDHA3 PCDHA1 PCDHA2 PCDHA5 PCDHA6 PCDHA8 PCDHA9 PCDHA10
esv26168	Chr.5:140842564 - 140859300 on Build GRCh38	Gain	PCDHA4 PCDHA7 PCDHA3 PCDHA1 PCDHA2 PCDHA5 PCDHA6 PCDHA8 PCDHA9 PCDHA10
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA4 PCDHA7 PCDHA3 PCDHA1 PCDHA2 PCDHA5 PCDHA6 PCDHA8 PCDHA9 PCDHA10
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA4 PCDHA7 PCDHA3 PCDHA1 PCDHA2 PCDHA5 PCDHA6 PCDHA8 PCDHA9 PCDHA10
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA4 PCDHA7 PCDHA3 PCDHA1 PCDHA2 PCDHA5 PCDHA6 PCDHA8 PCDHA9 PCDHA10
nsv1135376	Chr.5:140849315 - 140859915 on Build GRCh38	Deletion	PCDHA4 PCDHA7 PCDHA3 PCDHA1 PCDHA2 PCDHA5 PCDHA6 PCDHA8 PCDHA9 PCDHA10
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHA4 PCDHB13 PCDHA7 PCDHGB5 PCDHB2 PCDHA1 PCDHGB8P PCDHA11 PCDHA9 PCDHAC1 PCDHGA11 PCDHB5 PCDHB8 PCDHGA7 SLC25A2 PCDHGA1 PCDHAC2 PCDHGA12 PCDHGA2 PCDHB10 PCDHGA8 PCDHB17P PCDHA2 PCDHGB6 PCDHB15 PCDHGB4 PCDHB6 PCDHGB2 PCDHB1 PCDHGB7 PCDHB11 PCDHGA9 PCDHA5 PCDHA8 PCDHGA5 PCDHB7 TAF7 PCDHA13 PCDHB9 PCDHGB3 PCDHA6 PCDHB18P PCDHGA4 PCDHA12 PCDHB4 PCDHB12 PCDHA3 PCDHGA10 PCDHB19P LOC101926905 PCDHA10 PCDHGB1 PCDHGA6 PCDHB3 PCDHGA3 PCDHB14 PCDHB16
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	PCDHA4 PCDHA7 VTRNA1-2 PCDHA1 VTRNA1-3 PCDHA2 PCDHA6 PCDHA11 PCDHA9 HARS2 PCDHA3 VTRNA1-1 HARS PCDHA5 PCDHA8 ZMAT2 PCDHA10
dgv1652e212	Chr.5:140839141 - 140864158 on Build GRCh38	Loss	PCDHA4 PCDHA7 PCDHA3 PCDHA1 PCDHA2 PCDHA5 PCDHA6 PCDHA8 PCDHA9 PCDHA10
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA4 PCDHA7 PCDHA3 PCDHA1 PCDHA2 PCDHA5 PCDHA6 PCDHA8 PCDHA11 PCDHA9 PCDHA10
dgv10095n54	Chr.5:140846323 - 140864165 on Build GRCh38	Loss	PCDHA4 PCDHA7 PCDHA3 PCDHA1 PCDHA2 PCDHA5 PCDHA6 PCDHA8 PCDHA9 PCDHA10
nsv823263	Chr.5:140857638 - 140858368 on Build GRCh38	Gain	PCDHA4 PCDHA7 PCDHA3 PCDHA1 PCDHA2 PCDHA5 PCDHA6 PCDHA8 PCDHA9 PCDHA10
nsv599894	Chr.5:140852761 - 140864165 on Build GRCh38	Loss	PCDHA4 PCDHA7 PCDHA3 PCDHA1 PCDHA2 PCDHA5 PCDHA6 PCDHA8 PCDHA9 PCDHA10
dgv10099n54	Chr.5:140850785 - 140859109 on Build GRCh38	Loss	PCDHA4 PCDHA7 PCDHA3 PCDHA1 PCDHA2 PCDHA5 PCDHA6 PCDHA8 PCDHA9 PCDHA10

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding