Hs02550362_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140851680 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_014005.4	1	3909	NP_054724.1
	NM_031857.1			NP_114063.1
	AB002343.1	1	3909
	AF152317.1			AAD43711.1
	AJ007610.1			CAC22257.1
	AK314303.1
	BC104802.1			AAI04803.1
	BC104804.1			AAI04805.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA4 PCDHA6 PCDHA1 PCDHA2 PCDHA8 PCDHA10 PCDHA7 PCDHA9 PCDHA5 PCDHA3
dgv1651e212	Chr.5:140838196 - 140852242 on Build GRCh38	Loss	PCDHA4 PCDHA6 PCDHA1 PCDHA2 PCDHA8 PCDHA7 PCDHA9 PCDHA5 PCDHA3
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA4 PCDHA6 PCDHA1 PCDHA2 PCDHA8 PCDHA10 PCDHA7 PCDHA9 PCDHA5 PCDHA3
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA4 PCDHA6 PCDHA1 PCDHA2 PCDHA8 PCDHA10 PCDHA7 PCDHA9 PCDHA5 PCDHA3
dgv10101n54	Chr.5:140851652 - 140856743 on Build GRCh38	Loss	PCDHA4 PCDHA6 PCDHA1 PCDHA2 PCDHA8 PCDHA10 PCDHA7 PCDHA9 PCDHA5 PCDHA3
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHA6 PCDHGA5 PCDHB8 PCDHGA1 PCDHB5 PCDHB4 PCDHA4 PCDHB19P PCDHGA4 PCDHGB4 PCDHB14 PCDHA7 PCDHA5 PCDHB6 PCDHB13 PCDHAC1 PCDHB7 PCDHA8 PCDHB9 PCDHB10 PCDHB12 SLC25A2 PCDHGA3 PCDHGA10 PCDHB16 PCDHGB7 PCDHGB2 PCDHGA9 PCDHGB5 PCDHA9 PCDHB15 PCDHGB8P PCDHGB3 PCDHB18P PCDHGA12 PCDHA3 PCDHGA6 PCDHGB1 PCDHB1 PCDHAC2 LOC101926905 PCDHA12 PCDHGB6 PCDHB11 TAF7 PCDHB3 PCDHA2 PCDHA10 PCDHA11 PCDHB2 PCDHGA8 PCDHA13 PCDHGA2 PCDHA1 PCDHB17P PCDHGA7 PCDHGA11
dgv1652e212	Chr.5:140839141 - 140864158 on Build GRCh38	Loss	PCDHA4 PCDHA6 PCDHA1 PCDHA2 PCDHA8 PCDHA10 PCDHA7 PCDHA9 PCDHA5 PCDHA3
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA4 PCDHA6 PCDHA1 PCDHA2 PCDHA8 PCDHA10 PCDHA7 PCDHA9 PCDHA5 PCDHA11 PCDHA3
nsv515909	Chr.5:140848414 - 140852761 on Build GRCh38	Loss	PCDHA4 PCDHA6 PCDHA1 PCDHA2 PCDHA8 PCDHA7 PCDHA9 PCDHA5 PCDHA3
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA4 PCDHA6 PCDHA1 PCDHA2 PCDHA8 PCDHA10 PCDHA7 PCDHA9 PCDHA5 PCDHA3
esv2421858	Chr.5:140844251 - 140857963 on Build GRCh38	Deletion	PCDHA4 PCDHA6 PCDHA1 PCDHA2 PCDHA8 PCDHA10 PCDHA7 PCDHA9 PCDHA5 PCDHA3
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA4 PCDHA6 PCDHA1 PCDHA2 PCDHA8 PCDHA10 PCDHA7 PCDHA9 PCDHA5 PCDHA3
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA4 PCDHA6 PCDHA1 PCDHA2 PCDHA8 PCDHA10 PCDHA7 PCDHA9 PCDHA5 PCDHA3
dgv10096n54	Chr.5:140847633 - 140852761 on Build GRCh38	Loss	PCDHA4 PCDHA6 PCDHA1 PCDHA2 PCDHA8 PCDHA7 PCDHA9 PCDHA5 PCDHA3
esv26168	Chr.5:140842564 - 140859300 on Build GRCh38	Gain	PCDHA4 PCDHA6 PCDHA1 PCDHA2 PCDHA8 PCDHA10 PCDHA7 PCDHA9 PCDHA5 PCDHA3
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA4 PCDHA6 PCDHA1 PCDHA2 PCDHA8 PCDHA10 PCDHA7 PCDHA9 PCDHA5 PCDHA3
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA4 PCDHA6 PCDHA1 PCDHA2 PCDHA8 PCDHA10 PCDHA7 PCDHA9 PCDHA5 PCDHA3
nsv1024237	Chr.5:140810775 - 140852242 on Build GRCh38	Loss	PCDHA4 PCDHA6 PCDHA1 PCDHA2 PCDHA8 PCDHA7 PCDHA9 PCDHA5 PCDHA3
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA4 PCDHA6 PCDHA1 PCDHA2 PCDHA8 PCDHA10 PCDHA7 PCDHA9 PCDHA5 PCDHA3
nsv1135376	Chr.5:140849315 - 140859915 on Build GRCh38	Deletion	PCDHA4 PCDHA6 PCDHA1 PCDHA2 PCDHA8 PCDHA10 PCDHA7 PCDHA9 PCDHA5 PCDHA3
esv2657537	Chr.5:140850410 - 140855957 on Build GRCh38	Deletion	PCDHA4 PCDHA6 PCDHA1 PCDHA2 PCDHA8 PCDHA10 PCDHA7 PCDHA9 PCDHA5 PCDHA3
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	PCDHA6 PCDHA2 PCDHA8 HARS2 VTRNA1-3 PCDHA10 PCDHA11 HARS PCDHA3 PCDHA4 ZMAT2 PCDHA1 VTRNA1-2 PCDHA7 PCDHA9 PCDHA5 VTRNA1-1
nsv599841	Chr.5:140841349 - 140856513 on Build GRCh38	Loss	PCDHA4 PCDHA6 PCDHA1 PCDHA2 PCDHA8 PCDHA10 PCDHA7 PCDHA9 PCDHA5 PCDHA3
dgv10097n54	Chr.5:140849850 - 140856743 on Build GRCh38	Loss	PCDHA4 PCDHA6 PCDHA1 PCDHA2 PCDHA8 PCDHA10 PCDHA7 PCDHA9 PCDHA5 PCDHA3
esv3890744	Chr.5:140846323 - 140857963 on Build GRCh38	Loss	PCDHA4 PCDHA6 PCDHA1 PCDHA2 PCDHA8 PCDHA10 PCDHA7 PCDHA9 PCDHA5 PCDHA3
esv29977	Chr.5:140843471 - 140856955 on Build GRCh38	Gain	PCDHA4 PCDHA6 PCDHA1 PCDHA2 PCDHA8 PCDHA10 PCDHA7 PCDHA9 PCDHA5 PCDHA3
dgv10098n54	Chr.5:140850785 - 140856743 on Build GRCh38	Loss	PCDHA4 PCDHA6 PCDHA1 PCDHA2 PCDHA8 PCDHA10 PCDHA7 PCDHA9 PCDHA5 PCDHA3

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding