Hs02614059_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140843643 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2	1	2322	NP_061734.1
	NM_031856.1	1	2322	NP_114062.1
	AF152316.1	1	2322	AAD43710.1
	AF152486.1	1	2322	AAD43747.1
	BC136749.1	1	2417
	BC136750.1	1	2417

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv599839	Chr.5:140837299 - 140848579 on Build GRCh38	Gain	PCDHA3 PCDHA1 PCDHA5 PCDHA4 PCDHA2 PCDHA6 PCDHA7 PCDHA8 PCDHA9
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA3 PCDHA1 PCDHA5 PCDHA4 PCDHA2 PCDHA6 PCDHA10 PCDHA7 PCDHA8 PCDHA9
dgv1651e212	Chr.5:140838196 - 140852242 on Build GRCh38	Loss	PCDHA3 PCDHA1 PCDHA5 PCDHA4 PCDHA2 PCDHA6 PCDHA7 PCDHA8 PCDHA9
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA3 PCDHA1 PCDHA5 PCDHA4 PCDHA2 PCDHA6 PCDHA10 PCDHA7 PCDHA8 PCDHA9
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA3 PCDHA1 PCDHA5 PCDHA4 PCDHA2 PCDHA6 PCDHA10 PCDHA7 PCDHA8 PCDHA9
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHB12 PCDHB4 PCDHGB1 PCDHAC2 PCDHGA5 PCDHA8 PCDHB18P PCDHA4 PCDHB9 PCDHGA6 PCDHGA10 PCDHA5 PCDHA10 PCDHA7 PCDHA11 PCDHA9 PCDHB5 PCDHB10 PCDHB11 PCDHGB5 PCDHGB6 PCDHGB8P PCDHA12 PCDHGB4 PCDHA13 PCDHA3 PCDHA1 PCDHB15 SLC25A2 PCDHGA2 PCDHB16 PCDHB13 PCDHGB2 PCDHAC1 PCDHGA3 PCDHGA4 PCDHB17P PCDHGB3 PCDHGA1 PCDHGA12 PCDHA6 PCDHB19P PCDHGB7 PCDHB14 PCDHB1 PCDHGA11 PCDHB7 PCDHGA9 PCDHA2 PCDHGA8 LOC101926905 PCDHB2 PCDHB3 PCDHGA7 PCDHB6 PCDHB8 TAF7
dgv1652e212	Chr.5:140839141 - 140864158 on Build GRCh38	Loss	PCDHA3 PCDHA1 PCDHA5 PCDHA4 PCDHA2 PCDHA6 PCDHA10 PCDHA7 PCDHA8 PCDHA9
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA3 PCDHA1 PCDHA5 PCDHA4 PCDHA2 PCDHA6 PCDHA10 PCDHA7 PCDHA8 PCDHA11 PCDHA9
nsv1133616	Chr.5:140842215 - 140848715 on Build GRCh38	Deletion	PCDHA3 PCDHA1 PCDHA5 PCDHA4 PCDHA2 PCDHA6 PCDHA7 PCDHA8 PCDHA9
dgv970n67	Chr.5:140784829 - 140843644 on Build GRCh38	Gain	PCDHA3 PCDHA1 PCDHA5 PCDHA4 PCDHA2 PCDHA6 PCDHA7 PCDHA8
nsv436885	Chr.5:140835434 - 140846096 on Build GRCh38	Insertion	PCDHA3 PCDHA1 PCDHA5 PCDHA4 PCDHA2 PCDHA6 PCDHA7 PCDHA8
nsv980734	Chr.5:140841022 - 140843672 on Build GRCh38	Duplication	PCDHA3 PCDHA1 PCDHA5 PCDHA4 PCDHA2 PCDHA6 PCDHA7 PCDHA8
dgv972n67	Chr.5:140843057 - 140843649 on Build GRCh38	Gain	PCDHA3 PCDHA1 PCDHA5 PCDHA4 PCDHA2 PCDHA6 PCDHA7 PCDHA8
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA3 PCDHA1 PCDHA5 PCDHA4 PCDHA2 PCDHA6 PCDHA10 PCDHA7 PCDHA8 PCDHA9
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA3 PCDHA1 PCDHA5 PCDHA4 PCDHA2 PCDHA6 PCDHA10 PCDHA7 PCDHA8 PCDHA9
esv26168	Chr.5:140842564 - 140859300 on Build GRCh38	Gain	PCDHA3 PCDHA1 PCDHA5 PCDHA4 PCDHA2 PCDHA6 PCDHA10 PCDHA7 PCDHA8 PCDHA9
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA3 PCDHA1 PCDHA5 PCDHA4 PCDHA2 PCDHA6 PCDHA10 PCDHA7 PCDHA8 PCDHA9
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA3 PCDHA1 PCDHA5 PCDHA4 PCDHA2 PCDHA6 PCDHA10 PCDHA7 PCDHA8 PCDHA9
nsv1024237	Chr.5:140810775 - 140852242 on Build GRCh38	Loss	PCDHA3 PCDHA1 PCDHA5 PCDHA4 PCDHA2 PCDHA6 PCDHA7 PCDHA8 PCDHA9
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA3 PCDHA1 PCDHA5 PCDHA4 PCDHA2 PCDHA6 PCDHA10 PCDHA7 PCDHA8 PCDHA9
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	ZMAT2 PCDHA3 PCDHA1 PCDHA5 PCDHA6 PCDHA10 PCDHA7 PCDHA8 PCDHA11 HARS2 PCDHA9 VTRNA1-3 VTRNA1-1 PCDHA4 HARS PCDHA2 VTRNA1-2
nsv599841	Chr.5:140841349 - 140856513 on Build GRCh38	Loss	PCDHA3 PCDHA1 PCDHA5 PCDHA4 PCDHA2 PCDHA6 PCDHA10 PCDHA7 PCDHA8 PCDHA9
esv2861013	Chr.5:140834461 - 140848573 on Build GRCh38	Duplication	PCDHA3 PCDHA1 PCDHA5 PCDHA4 PCDHA2 PCDHA6 PCDHA7 PCDHA8 PCDHA9
nsv823251	Chr.5:140842018 - 140843644 on Build GRCh38	Gain	PCDHA3 PCDHA1 PCDHA5 PCDHA4 PCDHA2 PCDHA6 PCDHA7 PCDHA8
dgv10092n54	Chr.5:140835344 - 140850785 on Build GRCh38	Loss	PCDHA3 PCDHA1 PCDHA5 PCDHA4 PCDHA2 PCDHA6 PCDHA7 PCDHA8 PCDHA9
esv29977	Chr.5:140843471 - 140856955 on Build GRCh38	Gain	PCDHA3 PCDHA1 PCDHA5 PCDHA4 PCDHA2 PCDHA6 PCDHA10 PCDHA7 PCDHA8 PCDHA9
dgv1044e199	Chr.5:140843360 - 140849907 on Build GRCh38	Deletion	PCDHA3 PCDHA1 PCDHA5 PCDHA4 PCDHA2 PCDHA6 PCDHA7 PCDHA8 PCDHA9

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding