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Gene Symbol
PDZD3
Assay Reference Genome
Location

Chr.11:119186168 on build GRCh38
Cytoband
11q23.3
Assay ID Hs02631480_cn
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 79849

Gene Name:

 PDZ domain containing 3

Gene Aliases:

 IKEPP, NHERF4, PDZK2

Location:

 Chr.11:119185457-119190223 on Build GRCh38

Assay Gene Location:

 Within Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PDZD3 NM_001168468.1 NP_001161940.1
NM_024791.3 NP_079067.3
NR_033122.1 3 159
XM_011543000.2 3 141 XP_011541302.1
XM_011543001.2 3 235 XP_011541303.1
XM_011543002.2 3 327 XP_011541304.1
XM_011543005.2 XP_011541307.1
XM_017018334.1 2 555 XP_016873823.1
XM_017018335.1 2 555 XP_016873824.1
XM_017018336.1 2 555 XP_016873825.1
XM_017018337.1 2 555 XP_016873826.1
AB094096.1 2 538 BAC76050.1
AK026409.1 BAB15474.1
AK091966.1 3 141 BAC03780.1
AK298333.1 3 141
AK315403.1
AY047359.1 AAL10686.1
BC029042.1 AAH29042.1
BX648391.1
DA381610.1 3 236

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv556467 Chr.11:119154221 - 119193848 on Build GRCh38 Loss CCDC153 NLRX1 ABCG4 PDZD3
nsv556468 Chr.11:119185525 - 119195050 on Build GRCh38 Loss CCDC153 PDZD3
nsv556466 Chr.11:119106009 - 119188695 on Build GRCh38 Loss NLRX1 ABCG4 HINFP PDZD3 C2CD2L

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More Information


Additional Information:

For this assay, SNP(s) [rs202222447] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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