Hs02827929_cn

• Gene Symbol: SFPQ
• Assay Reference Genome Location: Chr.1:35189020 on build GRCh38
• Cytoband: 1p34.3

Target Gene Details

• Entrez Gene ID: 6421
• Gene Name: splicing factor proline and glutamine rich
• Gene Aliases: POMP100, PPP1R140, PSF
• Location: Chr.1:35176378-35193161 on Build GRCh38
• Assay Gene Location: Overlaps Intron 6 - Exon 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SFPQ	NM_005066.2			NP_005057.1
	NR_136702.1
	NR_136703.1
	XM_005271112.4			XP_005271169.1
	XM_005271113.4			XP_005271170.1
	XM_005271115.4			XP_005271172.1
	XM_011541950.2			XP_011540252.1
	XM_017002053.1			XP_016857542.1
	XM_017002054.1			XP_016857543.1
	BC004534.2			AAH04534.2
	BC051192.1			AAH51192.1
	X16850.1			CAA34747.1
	X70944.1			CAA50283.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv508149	Chr.1:35187187 - 35285669 on Build GRCh38	Deletion	ZMYM4 SFPQ

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

RNA metabolism protein

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
alternative mRNA splicing, via spliceosome
double-strand break repair via homologous recombination
transcription, DNA-templated
mRNA processing
RNA splicing
regulation of circadian rhythm
negative regulation of circadian rhythm
positive regulation of sister chromatid cohesion
negative regulation of transcription, DNA-templated
rhythmic process
histone H3 deacetylation
positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway

Function(s)

nucleotide binding
transcription regulatory region sequence-specific DNA binding
RNA polymerase II distal enhancer sequence-specific DNA binding
core promoter binding
chromatin binding
protein binding
histone deacetylase binding
transcription regulatory region DNA binding
poly(A) RNA binding