Hs02886019_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140851104 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_014005.4	1	3333	NP_054724.1
	NM_031857.1			NP_114063.1
	AB002343.1	1	3333
	AF152317.1			AAD43711.1
	AJ007610.1			CAC22257.1
	AK314303.1
	BC104802.1			AAI04803.1
	BC104804.1			AAI04805.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA7 PCDHA9 PCDHA2 PCDHA1 PCDHA6 PCDHA3 PCDHA4 PCDHA5 PCDHA8 PCDHA10
dgv1651e212	Chr.5:140838196 - 140852242 on Build GRCh38	Loss	PCDHA7 PCDHA9 PCDHA2 PCDHA1 PCDHA6 PCDHA3 PCDHA4 PCDHA5 PCDHA8
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA7 PCDHA9 PCDHA2 PCDHA1 PCDHA6 PCDHA3 PCDHA4 PCDHA5 PCDHA8 PCDHA10
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA7 PCDHA9 PCDHA2 PCDHA1 PCDHA6 PCDHA3 PCDHA4 PCDHA5 PCDHA8 PCDHA10
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHA7 PCDHA2 PCDHGA1 TAF7 PCDHB1 PCDHB17P PCDHGA8 PCDHGA5 PCDHGB2 PCDHGB7 LOC101926905 PCDHB15 PCDHGA2 PCDHGB5 PCDHGA10 PCDHB14 PCDHB11 PCDHGA4 PCDHA5 PCDHGB1 PCDHB5 PCDHA10 PCDHGB3 PCDHB6 PCDHA9 PCDHB4 PCDHGA7 PCDHB8 PCDHB7 PCDHA6 PCDHA3 PCDHB12 PCDHB19P PCDHGA6 PCDHGA9 PCDHB13 PCDHB2 PCDHA4 PCDHA12 PCDHB3 PCDHAC2 PCDHB16 SLC25A2 PCDHA8 PCDHA11 PCDHB9 PCDHGA12 PCDHGB8P PCDHA13 PCDHB18P PCDHAC1 PCDHGA3 PCDHA1 PCDHGB6 PCDHB10 PCDHGB4 PCDHGA11
dgv1652e212	Chr.5:140839141 - 140864158 on Build GRCh38	Loss	PCDHA7 PCDHA9 PCDHA2 PCDHA1 PCDHA6 PCDHA3 PCDHA4 PCDHA5 PCDHA8 PCDHA10
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA7 PCDHA11 PCDHA9 PCDHA2 PCDHA1 PCDHA6 PCDHA3 PCDHA4 PCDHA5 PCDHA8 PCDHA10
nsv515909	Chr.5:140848414 - 140852761 on Build GRCh38	Loss	PCDHA7 PCDHA9 PCDHA2 PCDHA1 PCDHA6 PCDHA3 PCDHA4 PCDHA5 PCDHA8
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA7 PCDHA9 PCDHA2 PCDHA1 PCDHA6 PCDHA3 PCDHA4 PCDHA5 PCDHA8 PCDHA10
esv2421858	Chr.5:140844251 - 140857963 on Build GRCh38	Deletion	PCDHA7 PCDHA9 PCDHA2 PCDHA1 PCDHA6 PCDHA3 PCDHA4 PCDHA5 PCDHA8 PCDHA10
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA7 PCDHA9 PCDHA2 PCDHA1 PCDHA6 PCDHA3 PCDHA4 PCDHA5 PCDHA8 PCDHA10
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA7 PCDHA9 PCDHA2 PCDHA1 PCDHA6 PCDHA3 PCDHA4 PCDHA5 PCDHA8 PCDHA10
dgv10096n54	Chr.5:140847633 - 140852761 on Build GRCh38	Loss	PCDHA7 PCDHA9 PCDHA2 PCDHA1 PCDHA6 PCDHA3 PCDHA4 PCDHA5 PCDHA8
esv26168	Chr.5:140842564 - 140859300 on Build GRCh38	Gain	PCDHA7 PCDHA9 PCDHA2 PCDHA1 PCDHA6 PCDHA3 PCDHA4 PCDHA5 PCDHA8 PCDHA10
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA7 PCDHA9 PCDHA2 PCDHA1 PCDHA6 PCDHA3 PCDHA4 PCDHA5 PCDHA8 PCDHA10
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA7 PCDHA9 PCDHA2 PCDHA1 PCDHA6 PCDHA3 PCDHA4 PCDHA5 PCDHA8 PCDHA10
nsv1024237	Chr.5:140810775 - 140852242 on Build GRCh38	Loss	PCDHA7 PCDHA9 PCDHA2 PCDHA1 PCDHA6 PCDHA3 PCDHA4 PCDHA5 PCDHA8
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA7 PCDHA9 PCDHA2 PCDHA1 PCDHA6 PCDHA3 PCDHA4 PCDHA5 PCDHA8 PCDHA10
nsv1135376	Chr.5:140849315 - 140859915 on Build GRCh38	Deletion	PCDHA7 PCDHA9 PCDHA2 PCDHA1 PCDHA6 PCDHA3 PCDHA4 PCDHA5 PCDHA8 PCDHA10
esv2657537	Chr.5:140850410 - 140855957 on Build GRCh38	Deletion	PCDHA7 PCDHA9 PCDHA2 PCDHA1 PCDHA6 PCDHA3 PCDHA4 PCDHA5 PCDHA8 PCDHA10
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	PCDHA7 HARS2 VTRNA1-1 PCDHA11 PCDHA2 HARS PCDHA4 PCDHA5 ZMAT2 VTRNA1-3 PCDHA10 PCDHA9 VTRNA1-2 PCDHA1 PCDHA6 PCDHA3 PCDHA8
nsv599841	Chr.5:140841349 - 140856513 on Build GRCh38	Loss	PCDHA7 PCDHA9 PCDHA2 PCDHA1 PCDHA6 PCDHA3 PCDHA4 PCDHA5 PCDHA8 PCDHA10
dgv10097n54	Chr.5:140849850 - 140856743 on Build GRCh38	Loss	PCDHA7 PCDHA9 PCDHA2 PCDHA1 PCDHA6 PCDHA3 PCDHA4 PCDHA5 PCDHA8 PCDHA10
esv3890744	Chr.5:140846323 - 140857963 on Build GRCh38	Loss	PCDHA7 PCDHA9 PCDHA2 PCDHA1 PCDHA6 PCDHA3 PCDHA4 PCDHA5 PCDHA8 PCDHA10
esv29977	Chr.5:140843471 - 140856955 on Build GRCh38	Gain	PCDHA7 PCDHA9 PCDHA2 PCDHA1 PCDHA6 PCDHA3 PCDHA4 PCDHA5 PCDHA8 PCDHA10
dgv10098n54	Chr.5:140850785 - 140856743 on Build GRCh38	Loss	PCDHA7 PCDHA9 PCDHA2 PCDHA1 PCDHA6 PCDHA3 PCDHA4 PCDHA5 PCDHA8 PCDHA10

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding