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See other HLA-DMA CNV Assays ›
Gene Symbol
HLA-DMA
Assay Reference Genome
Location

Chr.6:32948660 on build GRCh38
Cytoband
6p21.32
Assay ID Hs02922024_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 3108

Gene Name:

 major histocompatibility complex, class II, DM alpha

Gene Aliases:

 D6S222E, DMA, HLADM, RING6

Location:

 Chr.6:32948614-32953122 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
HLA-DMA NM_006120.3 NP_006111.2
AA649861.1
AK291858.1
AU100342.1
BC011447.1 AAH11447.1
BC026279.1 AAH26279.1
X62744.1 CAA44606.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2759417 Chr.6:32898012 - 32996319 on Build GRCh38 Gain LOC100294145 HLA-DMB BRD2 HLA-DMA
nsv483081 Chr.6:32882976 - 33031504 on Build GRCh38 Loss LOC100294145 HLA-DMB BRD2 HLA-DOA HLA-DMA
nsv1161376 Chr.6:32913750 - 32953997 on Build GRCh38 Duplication HLA-DMB HLA-DMA
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion SAPCD1-AS1 C6orf48 AGPAT1 SAPCD1 HSPA1B ATP6V1G2-DDX39B MIR219A1 SNORD84 HLA-DQB2 ATF6B HLA-DRB5 LTA HLA-DRB1 HCP5 STK19 APOM MSH5 MICB LOC102725068 DAXX PPT2-EGFL8 HSPA1A HLA-DMB NCR3 MIR6833 PSMB8-AS1 C4A C4B HLA-DMA ZBTB12 LTB HSPA1L MIR1236 DXO HCG25 RING1 TNF EGFL8 NOTCH4 CSNK2B CLIC1 PBX2 C6orf25 MIR6721 MIR3135B CUTA PPT2 NELFE SYNGAP1 RNF5 TAPBP C2-AS1 VWA7 SNORD52 HLA-DPA1 SNORD117 C2 MIR6832 NFKBIL1 C6orf47 LY6G6D SKIV2L RGL2 HCG24 HCG26 LY6G5B LY6G6C BRD2 HLA-DOA HSD17B8 EHMT2 DDX39B-AS1 MIR5004 VARS LSM2 FKBPL HLA-DQA2 LOC100287329 HLA-DPB2 SLC44A4 NEU1 CYP21A1P HLA-DQA1 LOC101929163 LOC100294145 ABHD16A HCG23 B3GALT4 DDX39B CYP21A2 SLC39A7 KIFC1 VPS52 PRRC2A AIF1 LST1 COL11A2 PSMB8 HLA-DRB6 C6orf10 DDAH2 TAP1 ZBTB22 GPANK1 ATP6V1G2 BTNL2 SNORA38 SNORD48 GPSM3 TAP2 LY6G6F AGER MCCD1 RXRB MIR6834 ZBTB9 PSMB9 RPS18 LOC100507547 TNXA MIR4646 PRRT1 MSH5-SAPCD1 WDR46 PPP1R2P1 LY6G5C HLA-DQB1-AS1 PFDN6 PHF1 LY6G6E TNXB HLA-DQB1 BAG6 MIR6873 CFB HLA-DOB HLA-DPB1 HLA-DRA
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion SAPCD1-AS1 C6orf48 AGPAT1 SAPCD1 HSPA1B ATP6V1G2-DDX39B MIR219A1 SNORD84 HLA-DQB2 ATF6B HLA-DRB5 LTA HLA-DRB1 HCP5 STK19 APOM MSH5 MICB LOC102725068 DAXX PPT2-EGFL8 HSPA1A HLA-DMB NCR3 MIR6833 PSMB8-AS1 C4A C4B HLA-DMA ZBTB12 LTB HSPA1L MIR1236 DXO HCG25 RING1 TNF EGFL8 NOTCH4 CSNK2B CLIC1 PBX2 C6orf25 MIR6721 MIR3135B CUTA PPT2 NELFE SYNGAP1 RNF5 TAPBP C2-AS1 VWA7 SNORD52 HLA-DPA1 SNORD117 C2 MIR6832 NFKBIL1 C6orf47 LY6G6D SKIV2L RGL2 HCG24 HCG26 LY6G5B LY6G6C BRD2 HLA-DOA HSD17B8 EHMT2 DDX39B-AS1 MIR5004 VARS LSM2 FKBPL HLA-DQA2 LOC100287329 HLA-DPB2 SLC44A4 NEU1 CYP21A1P HLA-DQA1 LOC101929163 LOC100294145 ABHD16A HCG23 B3GALT4 DDX39B CYP21A2 SLC39A7 KIFC1 VPS52 PRRC2A AIF1 LST1 COL11A2 PSMB8 HLA-DRB6 C6orf10 DDAH2 TAP1 ZBTB22 GPANK1 ATP6V1G2 BTNL2 SNORA38 SNORD48 GPSM3 TAP2 LY6G6F AGER MCCD1 RXRB MIR6834 ZBTB9 PSMB9 RPS18 LOC100507547 TNXA MIR4646 PRRT1 MSH5-SAPCD1 WDR46 PPP1R2P1 LY6G5C HLA-DQB1-AS1 PFDN6 PHF1 LY6G6E TNXB HLA-DQB1 BAG6 MIR6873 CFB HLA-DOB HLA-DPB1 HLA-DRA
nsv830633 Chr.6:32829085 - 32995634 on Build GRCh38 Loss TAP1 LOC100294145 TAP2 PPP1R2P1 PSMB9 HLA-DMB BRD2 PSMB8-AS1 PSMB8 HLA-DMA
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion RING1 TAP1 ZBTB22 MIR3135B CUTA HLA-DQA2 MIR219A1 SYNGAP1 HLA-DPB2 TAPBP HLA-DQB2 TAP2 RXRB MIR6834 ZBTB9 PSMB9 RPS18 HLA-DPA1 HLA-DQA1 DAXX LOC100294145 WDR46 PPP1R2P1 B3GALT4 HLA-DMB HLA-DQB1-AS1 PFDN6 PHF1 HLA-DQB1 PSMB8-AS1 SLC39A7 MIR6873 RGL2 HLA-DMA KIFC1 HLA-DOB VPS52 HCG24 BRD2 HLA-DOA HSD17B8 COL11A2 PSMB8 HLA-DPB1 MIR5004 HCG25

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