Hs03062158_cn

• Gene Symbol: PCDHB16
• Assay Reference Genome Location: Chr.5:141185871 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 57717
• Gene Name: protocadherin beta 16
• Gene Aliases: ME1, PCDH-BETA16, PCDH3X, PCDHB8a
• Location: Chr.5:141181690-141186221 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHB16	NM_020957.3	1	4182	NP_066008.2
	AB046841.1	1	4473
	AI926355.1	1	361
	BC036062.1			AAH36062.1
	CA438727.1	1	368

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2730844	Chr.5:141183869 - 141194030 on Build GRCh38	Deletion	PCDHB16 PCDHB10 PCDHB9
nsv599919	Chr.5:141182193 - 141212836 on Build GRCh38	Loss	PCDHB16 PCDHB10 PCDHB11 PCDHB12 PCDHB9
nsv5031	Chr.5:141177713 - 141202707 on Build GRCh38	Insertion	PCDHB16 PCDHB10 PCDHB11 PCDHB8 PCDHB9
nsv823266	Chr.5:141156966 - 141222863 on Build GRCh38	Gain	PCDHB16 PCDHB13 PCDHB10 PCDHB11 PCDHB14 PCDHB8 PCDHB17P PCDHB12 PCDHB9 PCDHB7
nsv1024594	Chr.5:141167591 - 141243953 on Build GRCh38	Loss	PCDHB16 PCDHB13 PCDHB10 PCDHB11 PCDHB14 PCDHB19P PCDHB8 PCDHB12 PCDHB18P PCDHB9 PCDHB7
nsv509092	Chr.5:141155922 - 141192231 on Build GRCh38	Insertion	PCDHB16 PCDHB8 PCDHB17P PCDHB9 PCDHB7
nsv471634	Chr.5:141106394 - 141258375 on Build GRCh38	Gain+Loss	PCDHB16 PCDHB13 PCDHB10 PCDHB5 PCDHB11 PCDHB4 PCDHB19P PCDHB8 PCDHB12 PCDHB18P PCDHB14 PCDHB15 PCDHB6 PCDHB17P PCDHB9 PCDHB7
nsv428127	Chr.5:141016768 - 141319173 on Build GRCh38	Loss	PCDHB16 PCDHB13 LOC101926905 PCDHB10 PCDHB5 PCDHB11 PCDHB4 PCDHB19P PCDHB8 PCDHB12 PCDHB18P PCDHB2 SLC25A2 PCDHB14 TAF7 PCDHB15 PCDHB3 PCDHB6 PCDHB17P PCDHB9 PCDHB1 PCDHB7
dgv958e201	Chr.5:141174165 - 141215536 on Build GRCh38	Deletion	PCDHB16 PCDHB13 PCDHB10 PCDHB11 PCDHB8 PCDHB12 PCDHB9 PCDHB7
nsv599908	Chr.5:141139584 - 141250122 on Build GRCh38	Loss	PCDHB16 PCDHB13 PCDHB10 PCDHB11 PCDHB19P PCDHB8 PCDHB12 PCDHB18P PCDHB14 PCDHB15 PCDHB6 PCDHB17P PCDHB9 PCDHB7
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHB13 PCDHGA9 LOC101926905 PCDHGA6 PCDHGB3 PCDHB11 PCDHB4 PCDHA5 PCDHB8 PCDHGB2 PCDHA4 SLC25A2 PCDHGA10 PCDHA9 PCDHA3 PCDHGB4 PCDHGB7 TAF7 PCDHGA4 PCDHGA7 PCDHB16 PCDHB10 PCDHA7 PCDHGA11 PCDHB12 PCDHB2 PCDHAC1 PCDHB14 PCDHGB6 PCDHB15 PCDHB3 PCDHA13 PCDHB1 PCDHB5 PCDHA12 PCDHB19P PCDHGB8P PCDHGA8 PCDHGA3 PCDHA11 PCDHGB5 PCDHA1 PCDHB9 PCDHGB1 PCDHGA2 PCDHGA5 PCDHGA12 PCDHAC2 PCDHA2 PCDHB18P PCDHA6 PCDHA8 PCDHB6 PCDHB17P PCDHB7 PCDHA10 PCDHGA1
nsv499084	Chr.5:141175152 - 141193769 on Build GRCh38	Gain	PCDHB16 PCDHB10 PCDHB8 PCDHB9 PCDHB7
esv2664767	Chr.5:141177668 - 141213756 on Build GRCh38	Deletion	PCDHB16 PCDHB10 PCDHB11 PCDHB8 PCDHB12 PCDHB9

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

homophilic cell adhesion via plasma membrane adhesion molecules
chemical synaptic transmission
synapse assembly
calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Function(s)

calcium ion binding