Hs03340743_cn

• Gene Symbol: FAAP20
• Assay Reference Genome Location: Chr.1:2208953 on build GRCh38
• Cytoband: 1p36.33

Target Gene Details

• Entrez Gene ID: 199990
• Gene Name: Fanconi anemia core complex associated protein 20
• Gene Aliases: C1orf86, FP7162
• Location: Chr.1:2184460-2212720 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FAAP20	NM_001282670.1			NP_001269599.1
	AK126870.1			BAC86730.1

Target Gene Details

• Entrez Gene ID: 105378592
• Gene Name: uncharacterized LOC105378592
• Gene Aliases: -
• Location: Chr.1:2207597-2215193 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC105378592	XM_017003076.1			XP_016858565.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv461727	Chr.1:2151050 - 2251031 on Build GRCh38	Loss	PRKCZ LOC105378592 FAAP20 LOC100506504 SKI
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	MIR6859-1 PRKCZ MIR6808 CFAP74 MRPL20 OR4F5 SDF4 AGRN LOC100129534 NOC2L FAAP20 TTLL10 LOC100506504 FAM138A MORN1 LOC102724312 SAMD11 OR4F16 CPSF3L TNFRSF18 ANKRD65 LOC729737 MMP23B CDK11B AURKAIP1 FAM87B MTND2P28 TMEM88B ATAD3A LOC105378591 MIR1302-2 TTLL10-AS1 KLHL17 SLC35E2B CALML6 ATAD3B LOC105378947 LOC100132287 DDX11L1 TMEM52 OR4F29 GABRD LOC100134822 FNDC10 ACAP3 LOC105378592 MIR6726 GNB1 MIR429 SSU72 FAM41C LOC100288069 PLEKHN1 MIB2 TMEM240 LOC100287934 VWA1 WASH7P RNF223 LOC107985728 NADK LINC01128 MIR6727 LOC102725121 FAM132A HES4 LOC107985729 LOC105378948 CPTP C1orf159 PERM1 LOC148413 MTND1P23 LOC100133331 PUSL1 LOC105378589 UBE2J2 LINC01342 MXRA8 LINC00115 LOC284600 LOC100288175 SCNN1D ISG15 CCNL2 MMP23A TNFRSF4 LOC100130417 MIR200A LOC101928626 MIR6859-2 B3GALT6 CDK11A MIR200B LOC107984841 SLC35E2 MIR6723 SKI TAS1R3 DVL1 ATAD3C LOC105378949
nsv951530	Chr.1:2153662 - 2229961 on Build GRCh38	Deletion	PRKCZ LOC105378592 FAAP20 LOC100506504 SKI
nsv470682	Chr.1:2188394 - 2378754 on Build GRCh38	Loss	MORN1 LOC105378592 FAAP20 LOC100129534 SKI
nsv545067	Chr.1:2208822 - 2263678 on Build GRCh38	Loss	LOC105378592 FAAP20 SKI
nsv834557	Chr.1:2117631 - 2311104 on Build GRCh38	Loss	PRKCZ LOC105378592 FAAP20 LOC100506504 SKI

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cellular response to DNA damage stimulus
translesion synthesis
interstrand cross-link repair

Function(s)

protein binding
polyubiquitin binding
ubiquitin binding
metal ion binding
K63-linked polyubiquitin binding