Hs03347450_cn

• Gene Symbol: FAAP20
• Assay Reference Genome Location: Chr.1:2208471 on build GRCh38
• Cytoband: 1p36.33

Target Gene Details

• Entrez Gene ID: 199990
• Gene Name: Fanconi anemia core complex associated protein 20
• Gene Aliases: C1orf86, FP7162
• Location: Chr.1:2184460-2212720 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FAAP20	NM_001282670.1			NP_001269599.1
	AK126870.1			BAC86730.1

Target Gene Details

• Entrez Gene ID: 105378592
• Gene Name: uncharacterized LOC105378592
• Gene Aliases: -
• Location: Chr.1:2207597-2215193 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC105378592	XM_017003076.1			XP_016858565.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv461727	Chr.1:2151050 - 2251031 on Build GRCh38	Loss	SKI LOC100506504 FAAP20 LOC105378592 PRKCZ
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	SSU72 ATAD3C OR4F5 LOC105378947 MIR200A KLHL17 MIR6808 FAM87B MIR429 LOC105378589 LOC100129534 OR4F29 MTND2P28 CALML6 LOC100134822 PERM1 LOC729737 B3GALT6 TNFRSF4 LOC105378592 GABRD CFAP74 LOC102725121 MTND1P23 RNF223 AGRN MIB2 MRPL20 MIR6859-1 PUSL1 NADK MIR6859-2 ANKRD65 LOC107984841 LOC101928626 MORN1 LOC105378948 LOC100287934 DVL1 LINC00115 WASH7P UBE2J2 LOC107985729 MXRA8 SAMD11 HES4 CPTP MMP23B LOC148413 PRKCZ LOC105378591 LINC01128 LOC100288069 SCNN1D LOC107985728 TTLL10 LINC01342 ATAD3B ATAD3A LOC102724312 TMEM52 C1orf159 SLC35E2B LOC100132287 CCNL2 TNFRSF18 SLC35E2 FAAP20 ISG15 FAM138A DDX11L1 TAS1R3 MMP23A VWA1 SKI LOC100288175 PLEKHN1 SDF4 CDK11A CPSF3L FAM132A MIR6726 LOC100133331 TMEM88B FNDC10 AURKAIP1 LOC105378949 MIR1302-2 LOC284600 TTLL10-AS1 NOC2L MIR6727 FAM41C CDK11B GNB1 MIR6723 LOC100130417 OR4F16 LOC100506504 MIR200B TMEM240 ACAP3
nsv951530	Chr.1:2153662 - 2229961 on Build GRCh38	Deletion	SKI LOC100506504 FAAP20 LOC105378592 PRKCZ
nsv470682	Chr.1:2188394 - 2378754 on Build GRCh38	Loss	LOC100129534 SKI FAAP20 LOC105378592 MORN1
nsv834557	Chr.1:2117631 - 2311104 on Build GRCh38	Loss	SKI LOC100506504 FAAP20 LOC105378592 PRKCZ

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cellular response to DNA damage stimulus
translesion synthesis
interstrand cross-link repair

Function(s)

protein binding
polyubiquitin binding
ubiquitin binding
metal ion binding
K63-linked polyubiquitin binding