Hs03355658_cn

• Gene Symbol: FAAP20
• Assay Reference Genome Location: Chr.1:2212709 on build GRCh38
• Cytoband: 1p36.33

Target Gene Details

• Entrez Gene ID: 199990
• Gene Name: Fanconi anemia core complex associated protein 20
• Gene Aliases: C1orf86, FP7162
• Location: Chr.1:2184460-2212720 on Build GRCh38
• Assay Gene Location: Overlaps - Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FAAP20	NM_001282670.1			NP_001269599.1
	AK126870.1			BAC86730.1

Target Gene Details

• Entrez Gene ID: 105378592
• Gene Name: uncharacterized LOC105378592
• Gene Aliases: -
• Location: Chr.1:2207597-2215193 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC105378592	XM_017003075.1	1	2485	XP_016858564.1
	XM_017003076.1	1	2485	XP_016858565.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv461727	Chr.1:2151050 - 2251031 on Build GRCh38	Loss	LOC105378592 PRKCZ SKI LOC100506504 FAAP20
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	MIR6808 OR4F16 SCNN1D SAMD11 ATAD3A ATAD3C HES4 MORN1 LOC105378949 LOC102725121 GABRD SKI CCNL2 LOC105378591 SLC35E2B LOC148413 MIR6726 LOC100506504 MTND1P23 UBE2J2 MIR429 NOC2L TNFRSF4 CFAP74 AGRN LOC107985728 MIR1302-2 MIR6859-2 FAM138A FNDC10 CALML6 ACAP3 B3GALT6 TMEM240 OR4F29 MIB2 LOC105378589 MIR6727 MRPL20 MXRA8 MIR6723 DVL1 PRKCZ ANKRD65 GNB1 MTND2P28 C1orf159 LOC284600 LOC100130417 AURKAIP1 MMP23A LOC100132287 ATAD3B LOC105378592 MIR6859-1 LOC107984841 DDX11L1 LINC00115 LOC100288175 CDK11A TMEM88B CPTP KLHL17 TMEM52 LOC729737 LOC100287934 RNF223 WASH7P TTLL10-AS1 LOC100133331 CDK11B SSU72 LINC01128 NADK CPSF3L SLC35E2 TNFRSF18 LOC101928626 LOC105378948 LOC100134822 FAM132A ISG15 PLEKHN1 LINC01342 PUSL1 LOC107985729 TAS1R3 SDF4 MIR200B LOC105378947 MMP23B LOC100129534 VWA1 FAM41C FAM87B LOC100288069 OR4F5 LOC102724312 PERM1 MIR200A TTLL10 FAAP20
nsv951530	Chr.1:2153662 - 2229961 on Build GRCh38	Deletion	LOC105378592 PRKCZ SKI LOC100506504 FAAP20
nsv470682	Chr.1:2188394 - 2378754 on Build GRCh38	Loss	MORN1 LOC105378592 LOC100129534 SKI FAAP20
nsv545067	Chr.1:2208822 - 2263678 on Build GRCh38	Loss	LOC105378592 SKI FAAP20
nsv834557	Chr.1:2117631 - 2311104 on Build GRCh38	Loss	LOC105378592 PRKCZ SKI LOC100506504 FAAP20

More Information

• Set Membership: Intragenic, Exonic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cellular response to DNA damage stimulus
translesion synthesis
interstrand cross-link repair

Function(s)

protein binding
polyubiquitin binding
ubiquitin binding
metal ion binding
K63-linked polyubiquitin binding