Hs03365830_cn

• Gene Symbol: FAAP20
• Assay Reference Genome Location: Chr.1:2212301 on build GRCh38
• Cytoband: 1p36.33

Target Gene Details

• Entrez Gene ID: 199990
• Gene Name: Fanconi anemia core complex associated protein 20
• Gene Aliases: C1orf86, FP7162
• Location: Chr.1:2184460-2212720 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FAAP20	NM_001282670.1			NP_001269599.1
	AK126870.1			BAC86730.1

Target Gene Details

• Entrez Gene ID: 105378592
• Gene Name: uncharacterized LOC105378592
• Gene Aliases: -
• Location: Chr.1:2207597-2215193 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC105378592	XM_017003076.1			XP_016858565.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv461727	Chr.1:2151050 - 2251031 on Build GRCh38	Loss	FAAP20 LOC105378592 SKI LOC100506504 PRKCZ
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	LOC102724312 SSU72 SCNN1D SKI MMP23B LOC100130417 LOC105378947 MXRA8 MTND2P28 MIB2 FNDC10 TNFRSF18 UBE2J2 OR4F5 AGRN MIR6726 MIR6727 DDX11L1 LOC102725121 LOC100133331 LOC100132287 RNF223 TTLL10-AS1 CDK11A TMEM88B LOC100287934 TTLL10 PUSL1 LINC01342 MIR6808 LOC284600 LOC107985728 HES4 FAM87B VWA1 MIR429 OR4F16 FAM41C NOC2L MMP23A TMEM52 LOC148413 ATAD3B LOC729737 PERM1 CCNL2 LOC105378949 LOC105378591 LOC105378592 ATAD3C TMEM240 MIR6723 CFAP74 PLEKHN1 LOC107985729 ISG15 DVL1 WASH7P GNB1 LOC100288069 MIR200A AURKAIP1 FAAP20 SDF4 MIR6859-2 CDK11B SAMD11 FAM138A CPSF3L FAM132A CALML6 MRPL20 MIR6859-1 LOC105378589 ANKRD65 MIR200B LOC105378948 OR4F29 KLHL17 CPTP LOC100288175 ACAP3 B3GALT6 LINC00115 LOC100129534 TNFRSF4 SLC35E2B C1orf159 MIR1302-2 LOC101928626 ATAD3A LOC100134822 SLC35E2 LOC100506504 PRKCZ LINC01128 TAS1R3 NADK MORN1 GABRD MTND1P23 LOC107984841
nsv951530	Chr.1:2153662 - 2229961 on Build GRCh38	Deletion	FAAP20 LOC105378592 SKI LOC100506504 PRKCZ
nsv470682	Chr.1:2188394 - 2378754 on Build GRCh38	Loss	FAAP20 LOC105378592 SKI LOC100129534 MORN1
nsv545067	Chr.1:2208822 - 2263678 on Build GRCh38	Loss	FAAP20 LOC105378592 SKI
nsv834557	Chr.1:2117631 - 2311104 on Build GRCh38	Loss	FAAP20 LOC105378592 SKI LOC100506504 PRKCZ

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cellular response to DNA damage stimulus
translesion synthesis
interstrand cross-link repair

Function(s)

protein binding
polyubiquitin binding
ubiquitin binding
metal ion binding
K63-linked polyubiquitin binding