Hs03380632_cn

• Gene Symbol: TP73
• Assay Reference Genome Location: Chr.1:3670769 on build GRCh38
• Cytoband: 1p36.32

Target Gene Details

• Entrez Gene ID: 7161
• Gene Name: tumor protein p73
• Gene Aliases: P73
• Location: Chr.1:3652565-3736201 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TP73	NM_001204184.1			NP_001191113.1
	NM_001204185.1			NP_001191114.1
	NM_001204186.1			NP_001191115.1
	NM_001204187.1			NP_001191116.1
	NM_001204188.1			NP_001191117.1
	NM_005427.3			NP_005418.1
	BC117251.1
	BC117253.1
	Y11416.1			CAA72220.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv470687	Chr.1:3356499 - 3763210 on Build GRCh38	Loss	TPRG1L MIR551A CCDC27 WRAP73 ARHGEF16 TP73-AS1 PRDM16 TP73 MEGF6
nsv545128	Chr.1:3630371 - 3700037 on Build GRCh38	Loss	WRAP73 TP73
nsv1001715	Chr.1:3627619 - 3769754 on Build GRCh38	Loss	TPRG1L CCDC27 WRAP73 TP73-AS1 TP73
esv3585042	Chr.1:3585575 - 4260083 on Build GRCh38	Gain	TPRG1L LINC01134 CCDC27 LINC01346 CEP104 DFFB SMIM1 MEGF6 C1orf174 LRRC47 WRAP73 TP73-AS1 TP73
nsv1012423	Chr.1:3477686 - 4747449 on Build GRCh38	Gain	LOC284661 TPRG1L LINC01134 CCDC27 LINC01346 CEP104 DFFB SMIM1 MEGF6 C1orf174 MIR551A LRRC47 WRAP73 ARHGEF16 TP73-AS1 AJAP1 TP73
nsv951959	Chr.1:3051037 - 3812036 on Build GRCh38	Deletion	TPRG1L CCDC27 LOC105378604 LINC00982 SMIM1 MEGF6 MIR4251 MIR551A LRRC47 WRAP73 ARHGEF16 TP73-AS1 PRDM16 TP73
nsv830314	Chr.1:3660776 - 3804275 on Build GRCh38	Gain+Loss	CCDC27 LRRC47 TP73-AS1 SMIM1 TP73
esv3585045	Chr.1:3611161 - 3686920 on Build GRCh38	Gain	TPRG1L WRAP73 TP73 MEGF6
dgv8e212	Chr.1:3669347 - 3673132 on Build GRCh38	Loss	TP73
esv2758916	Chr.1:3668477 - 3738972 on Build GRCh38	Gain	TP73-AS1 TP73

More Information

Additional Information:

For this assay, SNP(s) [rs117656734] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

P53-like transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
activation of MAPK activity
kidney development
mismatch repair
transcription from RNA polymerase II promoter
cellular response to DNA damage stimulus
DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator
cell cycle arrest
regulation of mitotic cell cycle
intrinsic apoptotic signaling pathway in response to DNA damage
response to X-ray
response to organonitrogen compound
response to gamma radiation
regulation of gene expression
viral process
mitotic G1 DNA damage checkpoint
cellular response to UV
response to drug
intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
regulation of apoptotic process
negative regulation of JUN kinase activity
negative regulation of neuron apoptotic process
negative regulation of neuron differentiation
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
positive regulation of oligodendrocyte differentiation
protein tetramerization
negative regulation of cardiac muscle cell proliferation
positive regulation of cell cycle arrest
positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway
regulation of signal transduction by p53 class mediator

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II transcription factor activity, sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
p53 binding
chromatin binding
damaged DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding
transcription factor binding
protein kinase binding
identical protein binding
transcription regulatory region DNA binding
metal ion binding