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See other ARHGEF4 CNV Assays ›
Gene Symbol
ARHGEF4
Assay Reference Genome
Location

Chr.2:130839425 on build GRCh38
Cytoband
2q21.1
Assay ID Hs03442738_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 50649

Gene Name:

 Rho guanine nucleotide exchange factor 4

Gene Aliases:

 ASEF, ASEF1, GEF4, STM6

Location:

 Chr.2:130836916-131047253 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ARHGEF4 XM_005263681.1 XP_005263738.1
XM_005263685.3 XP_005263742.1
XM_011511274.2 XP_011509576.1
XM_017004231.1 XP_016859720.1
AK127124.1

Target Gene Details

Entrez Gene ID:

 653269

Gene Name:

 POTE ankyrin domain family member I

Gene Aliases:

 POTE2beta

Location:

 Chr.2:130462245-131626428 on Build GRCh38

Assay Gene Location:
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
POTEI

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4074n100 Chr.2:130550793 - 131291209 on Build GRCh38 Gain ARHGEF4 AMER3 POTEJ CYP4F30P GPR148 PLEKHB2 POTEE CFC1 TISP43 POTEI FAM168B LOC440910
dgv731e199 Chr.2:130678437 - 131300107 on Build GRCh38 Deletion ARHGEF4 AMER3 CYP4F30P GPR148 PLEKHB2 POTEE POTEI FAM168B LOC440910
esv2670824 Chr.2:130625264 - 131605218 on Build GRCh38 Deletion TUBA3D ARHGEF4 MIR4784 AMER3 MZT2A POTEJ POTEKP PLEKHB2 LOC150776 FAM168B NOC2LP2 CCDC74A LINC01120 CYP4F30P GPR148 POTEE POTEI WTH3DI LOC440910
nsv583136 Chr.2:130730100 - 130846832 on Build GRCh38 Loss ARHGEF4 AMER3 GPR148 POTEI
dgv4075n100 Chr.2:130720375 - 131521740 on Build GRCh38 Gain TUBA3D ARHGEF4 MIR4784 AMER3 MZT2A PLEKHB2 LOC150776 FAM168B NOC2LP2 LINC01120 GPR148 POTEE POTEI WTH3DI LOC440910
esv3893337 Chr.2:130722838 - 131194387 on Build GRCh38 Loss ARHGEF4 AMER3 GPR148 PLEKHB2 POTEI FAM168B
dgv616e201 Chr.2:130674635 - 131312550 on Build GRCh38 Deletion ARHGEF4 AMER3 CYP4F30P GPR148 PLEKHB2 POTEE POTEI FAM168B LOC440910
nsv583135 Chr.2:130724905 - 131194388 on Build GRCh38 Loss ARHGEF4 AMER3 GPR148 PLEKHB2 POTEI FAM168B
nsv524021 Chr.2:130724906 - 131553515 on Build GRCh38 Loss TUBA3D ARHGEF4 MIR4784 AMER3 MZT2A PLEKHB2 LOC150776 FAM168B NOC2LP2 CCDC74A LINC01120 GPR148 POTEE POTEI WTH3DI LOC440910
esv2760576 Chr.2:130634172 - 131521752 on Build GRCh38 Gain+Loss TUBA3D ARHGEF4 MIR4784 AMER3 MZT2A POTEJ PLEKHB2 LOC150776 FAM168B NOC2LP2 LINC01120 CYP4F30P GPR148 POTEE POTEI WTH3DI LOC440910
esv2759092 Chr.2:129589265 - 132440430 on Build GRCh38 Gain+Loss MED15P9 ANKRD30BL PLEKHB2 LOC100507460 CFC1B NOC2LP1 NOC2LP2 CCDC115 CYP4F30P POTEE TISP43 FAR2P1 LOC440910 TUBA3D AMER3 CFC1 PTPN18 LOC101927924 FAM168B TUBA3E MIR663B WTH3DI MIR4784 POTEJ POTEKP LOC646743 C2orf27B LINC01087 CCDC74A FAM201B C2orf27A POTEI ARHGEF4 ZNF806 FAR2P2 IMP4 POTEF CYP4F62P LOC107985778 MZT2A GPR39 LOC150776 CCDC74B RAB6C LOC389033 LINC01120 GPR148 MZT2B SMPD4 RAB6C-AS1
nsv523500 Chr.2:130835472 - 130853759 on Build GRCh38 Loss ARHGEF4 POTEI
nsv428403 Chr.2:129818076 - 130882067 on Build GRCh38 Loss MED15P9 POTEJ LOC646743 CFC1B NOC2LP1 CCDC115 CYP4F30P TISP43 FAR2P1 POTEI ARHGEF4 FAR2P2 IMP4 POTEF AMER3 CYP4F62P LOC107985778 CCDC74B CFC1 PTPN18 LOC101927924 TUBA3E RAB6C LOC389033 GPR148 MZT2B SMPD4 RAB6C-AS1

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More Information


Additional Information:

For this assay, SNP(s) [rs73960344] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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