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Gene Symbol
AGPAT1
Assay Reference Genome
Location

Chr.6:32177736 on build GRCh38
Cytoband
6p21.32
Assay ID Hs03583878_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10554

Gene Name:

 1-acylglycerol-3-phosphate O-acyltransferase 1

Gene Aliases:

 1-AGPAT1, G15, LPAAT-alpha, LPAATA

Location:

 Chr.6:32168206-32178111 on Build GRCh38

Assay Gene Location:

 Within Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGPAT1 NM_032741.4 NP_116130.2
XM_005248806.2 XP_005248863.1
XM_011514234.1 1 101 XP_011512536.1
BC002402.2 AAH02402.1
BC003007.1 AAH03007.1
DB118884.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv24778 Chr.6:32177265 - 32180330 on Build GRCh38 Loss RNF5 MIR6833 AGPAT1
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss FKBPL MIR6721 TNXB PPT2-EGFL8 AGER EGFL8 PPT2 PBX2 NOTCH4 RNF5 MIR6833 LOC100507547 AGPAT1 PRRT1 GPSM3 ATF6B
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss FKBPL BTNL2 MIR6721 C6orf10 TNXB HLA-DRA PPT2-EGFL8 EGFL8 HLA-DQB2 PPT2 NOTCH4 C4B RNF5 HCG23 LOC100507547 HLA-DQA2 HLA-DQA1 HLA-DQB1-AS1 HLA-DRB1 GPSM3 C4A CYP21A1P AGER MIR3135B PBX2 MIR6833 CYP21A2 AGPAT1 PRRT1 HLA-DRB6 LOC101929163 TNXA HLA-DQB1 HLA-DRB5 ATF6B
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss C6orf10 MIR1236 PPT2-EGFL8 EGFL8 PPT2 NOTCH4 C2 RNF5 LOC100507547 HLA-DQA1 HLA-DRB1 C2-AS1 C4A CFB HSPA1B AGER PBX2 SKIV2L MIR6833 CYP21A2 AGPAT1 PRRT1 NELFE TNXA SNORD52 SLC44A4 FKBPL BTNL2 MIR6721 SNORD48 EHMT2 TNXB HLA-DRA C4B HCG23 HLA-DQB1-AS1 DXO STK19 GPSM3 ZBTB12 CYP21A1P HSPA1A C6orf48 NEU1 HLA-DRB6 LOC101929163 HLA-DQB1 HLA-DRB5 ATF6B
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss FKBPL MIR6721 MIR1236 TNXB PPT2-EGFL8 EGFL8 PPT2 NOTCH4 C4B C2 RNF5 LOC100507547 DXO STK19 C2-AS1 GPSM3 C4A CFB CYP21A1P AGER PBX2 SKIV2L MIR6833 CYP21A2 AGPAT1 PRRT1 NELFE TNXA ATF6B
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion MSH5-SAPCD1 PRRC2A C6orf10 SNORD117 DDX39B MIR1236 APOM PPT2-EGFL8 EGFL8 PPT2 NOTCH4 C2 RNF5 LOC100507547 SNORD84 HLA-DRB1 C2-AS1 C4A CFB LOC102725068 VWA7 SAPCD1 HSPA1L LY6G5B LSM2 HSPA1B AGER ATP6V1G2 LY6G6E CSNK2B CLIC1 PBX2 SKIV2L MIR6833 CYP21A2 AGPAT1 LOC100287329 PRRT1 NELFE TNXA DDAH2 SAPCD1-AS1 SNORD52 SLC44A4 FKBPL BTNL2 MIR6721 MSH5 C6orf25 HCP5 SNORD48 EHMT2 MICB MIR4646 TNXB HLA-DRA TNF BAG6 LTB SNORA38 LY6G6F ABHD16A LST1 C4B HCG23 LTA DXO STK19 VARS GPSM3 NCR3 ZBTB12 GPANK1 NFKBIL1 CYP21A1P LY6G6C HSPA1A C6orf48 C6orf47 NEU1 HCG26 AIF1 LY6G6D MIR6832 DDX39B-AS1 ATP6V1G2-DDX39B HLA-DRB6 LOC101929163 MCCD1 LY6G5C HLA-DRB5 ATF6B
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion MSH5-SAPCD1 C6orf10 PSMB8 MIR1236 HLA-DMB HCG24 PPT2-EGFL8 HCG25 EGFL8 HLA-DQB2 PPT2 LOC100507547 SNORD84 SLC39A7 ZBTB9 PFDN6 CFB MIR6834 TAP1 LY6G5B TAP2 PHF1 COL11A2 HSPA1B HLA-DOB AGER ATP6V1G2 CLIC1 PBX2 SKIV2L CYP21A2 LOC100287329 SNORD52 SLC44A4 FKBPL MSH5 C6orf25 PPP1R2P1 EHMT2 MICB RGL2 BAG6 LTB LY6G6F ABHD16A LST1 HCG23 HLA-DMA LTA MIR219A1 STK19 VARS GPSM3 ZBTB22 ZBTB12 SYNGAP1 NFKBIL1 CYP21A1P LY6G6C MIR5004 DAXX C6orf48 C6orf47 NEU1 HCG26 WDR46 LOC100294145 RXRB HLA-DOA LY6G6D ATP6V1G2-DDX39B HSD17B8 HLA-DQB1 PRRC2A SNORD117 DDX39B APOM NOTCH4 C2 RNF5 MIR6873 HLA-DQA2 BRD2 HLA-DQA1 HLA-DRB1 C2-AS1 HLA-DPB1 VPS52 C4A LOC102725068 VWA7 SAPCD1 PSMB9 HSPA1L LSM2 PSMB8-AS1 TAPBP LY6G6E CSNK2B RPS18 MIR6833 AGPAT1 PRRT1 NELFE TNXA DDAH2 SAPCD1-AS1 BTNL2 CUTA MIR6721 HCP5 SNORD48 MIR4646 HLA-DPB2 TNXB HLA-DRA B3GALT4 TNF SNORA38 C4B HLA-DQB1-AS1 DXO NCR3 GPANK1 HSPA1A HLA-DPA1 MIR3135B AIF1 MIR6832 RING1 DDX39B-AS1 HLA-DRB6 LOC101929163 MCCD1 LY6G5C KIFC1 HLA-DRB5 ATF6B
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss FKBPL MIR6721 TNXB PPT2-EGFL8 AGER EGFL8 PPT2 PBX2 NOTCH4 RNF5 MIR6833 LOC100507547 AGPAT1 PRRT1 GPSM3 ATF6B
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion MSH5-SAPCD1 C6orf10 PSMB8 MIR1236 HLA-DMB HCG24 PPT2-EGFL8 HCG25 EGFL8 HLA-DQB2 PPT2 LOC100507547 SNORD84 SLC39A7 ZBTB9 PFDN6 CFB MIR6834 TAP1 LY6G5B TAP2 PHF1 COL11A2 HSPA1B HLA-DOB AGER ATP6V1G2 CLIC1 PBX2 SKIV2L CYP21A2 LOC100287329 SNORD52 SLC44A4 FKBPL MSH5 C6orf25 PPP1R2P1 EHMT2 MICB RGL2 BAG6 LTB LY6G6F ABHD16A LST1 HCG23 HLA-DMA LTA MIR219A1 STK19 VARS GPSM3 ZBTB22 ZBTB12 SYNGAP1 NFKBIL1 CYP21A1P LY6G6C MIR5004 DAXX C6orf48 C6orf47 NEU1 HCG26 WDR46 LOC100294145 RXRB HLA-DOA LY6G6D ATP6V1G2-DDX39B HSD17B8 HLA-DQB1 PRRC2A SNORD117 DDX39B APOM NOTCH4 C2 RNF5 MIR6873 HLA-DQA2 BRD2 HLA-DQA1 HLA-DRB1 C2-AS1 HLA-DPB1 VPS52 C4A LOC102725068 VWA7 SAPCD1 PSMB9 HSPA1L LSM2 PSMB8-AS1 TAPBP LY6G6E CSNK2B RPS18 MIR6833 AGPAT1 PRRT1 NELFE TNXA DDAH2 SAPCD1-AS1 BTNL2 CUTA MIR6721 HCP5 SNORD48 MIR4646 HLA-DPB2 TNXB HLA-DRA B3GALT4 TNF SNORA38 C4B HLA-DQB1-AS1 DXO NCR3 GPANK1 HSPA1A HLA-DPA1 MIR3135B AIF1 MIR6832 RING1 DDX39B-AS1 HLA-DRB6 LOC101929163 MCCD1 LY6G5C KIFC1 HLA-DRB5 ATF6B
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss MSH5-SAPCD1 PRRC2A C6orf10 SNORD117 DDX39B MIR1236 APOM PPT2-EGFL8 EGFL8 PPT2 NOTCH4 C2 RNF5 LOC100507547 SNORD84 C2-AS1 C4A CFB LOC102725068 VWA7 MICA SAPCD1 HSPA1L LY6G5B LSM2 HSPA1B AGER ATP6V1G2 LY6G6E CSNK2B CLIC1 PBX2 SKIV2L MIR6833 CYP21A2 AGPAT1 LOC100287329 PRRT1 NELFE TNXA DDAH2 SAPCD1-AS1 SNORD52 SLC44A4 FKBPL BTNL2 MIR6721 MSH5 C6orf25 HCP5 SNORD48 EHMT2 MICB MIR4646 TNXB HLA-DRA TNF BAG6 LTB SNORA38 LY6G6F ABHD16A LST1 C4B HCG23 LTA DXO STK19 VARS GPSM3 NCR3 ZBTB12 GPANK1 NFKBIL1 CYP21A1P LY6G6C HSPA1A HLA-B C6orf48 C6orf47 NEU1 HCG26 MIR6891 AIF1 LY6G6D MIR6832 DDX39B-AS1 ATP6V1G2-DDX39B LOC101929163 MCCD1 LY6G5C ATF6B

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