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Gene Symbol
AGPAT1
Assay Reference Genome
Location

Chr.6:32174143 on build GRCh38
Cytoband
6p21.32
Assay ID Hs03604711_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 10554

Gene Name:

 1-acylglycerol-3-phosphate O-acyltransferase 1

Gene Aliases:

 1-AGPAT1, G15, LPAAT-alpha, LPAATA

Location:

 Chr.6:32168206-32178111 on Build GRCh38

Assay Gene Location:

 Within Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGPAT1 NM_006411.3 NP_006402.1
NM_032741.4 NP_116130.2
XM_005248805.3 XP_005248862.1
XM_005248806.2 XP_005248863.1
XM_011514234.1 XP_011512536.1
AF218034.1 AAG17276.1
AK056346.1
AK058025.1
AK299252.1
AK315950.1
BC002402.2 AAH02402.1
BC003007.1 AAH03007.1
BC004310.1 AAH04310.1
BC090849.1 AAH90849.1
DA529681.1
DB118884.1
U56417.1 AAB58775.1
Y09565.1 CAA70758.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss NOTCH4 PPT2 MIR6721 MIR6833 ATF6B PPT2-EGFL8 LOC100507547 PRRT1 RNF5 GPSM3 AGPAT1 FKBPL EGFL8 PBX2 AGER TNXB
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss C6orf10 NOTCH4 HCG23 HLA-DQB1-AS1 MIR6721 MIR6833 MIR3135B HLA-DQB2 CYP21A1P ATF6B LOC101929163 LOC100507547 HLA-DQA1 PRRT1 HLA-DRB6 GPSM3 EGFL8 TNXB PPT2 HLA-DRB5 TNXA HLA-DQA2 PPT2-EGFL8 C4A CYP21A2 C4B RNF5 AGPAT1 FKBPL BTNL2 PBX2 HLA-DQB1 HLA-DRB1 HLA-DRA AGER
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss C6orf10 SNORD48 HLA-DQB1-AS1 SNORD52 CYP21A1P ATF6B NELFE HLA-DQA1 PRRT1 SKIV2L C2 HSPA1A TNXB C6orf48 TNXA PPT2-EGFL8 DXO CYP21A2 C4B MIR1236 FKBPL ZBTB12 BTNL2 HLA-DRB1 HLA-DRA AGER NOTCH4 C2-AS1 HCG23 NEU1 MIR6721 MIR6833 LOC101929163 LOC100507547 HLA-DRB6 GPSM3 EGFL8 EHMT2 PPT2 HLA-DRB5 CFB C4A RNF5 SLC44A4 AGPAT1 STK19 HSPA1B PBX2 HLA-DQB1
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss NOTCH4 C2-AS1 MIR6721 MIR6833 CYP21A1P ATF6B NELFE LOC100507547 PRRT1 SKIV2L GPSM3 EGFL8 C2 TNXB PPT2 TNXA CFB PPT2-EGFL8 C4A DXO CYP21A2 C4B RNF5 MIR1236 AGPAT1 FKBPL STK19 PBX2 AGER
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion C6orf10 LY6G6C SNORD48 SNORD52 CYP21A1P DDAH2 ATF6B NELFE ATP6V1G2-DDX39B PRRT1 LY6G6F SKIV2L APOM MICB LOC102725068 TNF SAPCD1 DDX39B-AS1 C2 SAPCD1-AS1 LTB HSPA1A TNXB C6orf48 LY6G5C HSPA1L TNXA BAG6 MSH5 MIR6832 PPT2-EGFL8 MIR4646 HCG26 DXO CYP21A2 C4B MIR1236 MCCD1 SNORA38 FKBPL LTA ZBTB12 BTNL2 HLA-DRB1 ATP6V1G2 HLA-DRA AGER CSNK2B DDX39B NOTCH4 ABHD16A SNORD117 C2-AS1 HCG23 NEU1 MIR6721 MIR6833 GPANK1 LY6G6D LOC101929163 NFKBIL1 LOC100507547 HLA-DRB6 GPSM3 MSH5-SAPCD1 EGFL8 EHMT2 LY6G6E PPT2 LST1 HLA-DRB5 LSM2 CFB AIF1 NCR3 PRRC2A VARS C4A C6orf47 HCP5 SNORD84 C6orf25 LY6G5B RNF5 VWA7 SLC44A4 AGPAT1 LOC100287329 STK19 HSPA1B PBX2 CLIC1
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion BRD2 HLA-DQB1-AS1 COL11A2 CYP21A1P DDAH2 NELFE ATP6V1G2-DDX39B PRRT1 LY6G6F MICB TAP2 TNF SAPCD1 C2 HSPA1A TNXB MIR6873 LY6G5C TNXA MIR6834 ZBTB9 MSH5 MIR4646 HCG26 MIR1236 FKBPL LTA ZBTB12 BTNL2 DAXX ATP6V1G2 HLA-DRA CSNK2B PSMB8-AS1 NOTCH4 ABHD16A HCG23 PSMB8 NEU1 MIR6833 GPANK1 LY6G6D SLC39A7 LOC100294145 LOC101929163 NFKBIL1 LOC100507547 GPSM3 MSH5-SAPCD1 EGFL8 EHMT2 RXRB CUTA LST1 HLA-DOA ZBTB22 RPS18 HLA-DRB5 HSD17B8 AIF1 PRRC2A HLA-DQA2 HCG25 VARS HCP5 SNORD84 C6orf25 LY6G5B VWA7 SLC44A4 WDR46 LOC100287329 HSPA1B HLA-DMB PFDN6 RING1 PBX2 TAP1 PHF1 C6orf10 LY6G6C SYNGAP1 SNORD48 HCG24 SNORD52 ATF6B VPS52 HLA-DQA1 SKIV2L APOM HLA-DMA LOC102725068 DDX39B-AS1 SAPCD1-AS1 LTB C6orf48 HSPA1L B3GALT4 BAG6 MIR6832 PPT2-EGFL8 DXO CYP21A2 C4B MCCD1 SNORA38 MIR219A1 HLA-DRB1 HLA-DPB1 AGER DDX39B SNORD117 C2-AS1 MIR6721 MIR5004 MIR3135B HLA-DQB2 RGL2 HLA-DPA1 HLA-DRB6 KIFC1 HLA-DOB LY6G6E TAPBP PPT2 PPP1R2P1 LSM2 CFB NCR3 PSMB9 HLA-DPB2 C4A C6orf47 RNF5 AGPAT1 STK19 HLA-DQB1 CLIC1
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss NOTCH4 PPT2 MIR6721 MIR6833 ATF6B PPT2-EGFL8 LOC100507547 PRRT1 RNF5 GPSM3 AGPAT1 FKBPL EGFL8 PBX2 AGER TNXB
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion BRD2 HLA-DQB1-AS1 COL11A2 CYP21A1P DDAH2 NELFE ATP6V1G2-DDX39B PRRT1 LY6G6F MICB TAP2 TNF SAPCD1 C2 HSPA1A TNXB MIR6873 LY6G5C TNXA MIR6834 ZBTB9 MSH5 MIR4646 HCG26 MIR1236 FKBPL LTA ZBTB12 BTNL2 DAXX ATP6V1G2 HLA-DRA CSNK2B PSMB8-AS1 NOTCH4 ABHD16A HCG23 PSMB8 NEU1 MIR6833 GPANK1 LY6G6D SLC39A7 LOC100294145 LOC101929163 NFKBIL1 LOC100507547 GPSM3 MSH5-SAPCD1 EGFL8 EHMT2 RXRB CUTA LST1 HLA-DOA ZBTB22 RPS18 HLA-DRB5 HSD17B8 AIF1 PRRC2A HLA-DQA2 HCG25 VARS HCP5 SNORD84 C6orf25 LY6G5B VWA7 SLC44A4 WDR46 LOC100287329 HSPA1B HLA-DMB PFDN6 RING1 PBX2 TAP1 PHF1 C6orf10 LY6G6C SYNGAP1 SNORD48 HCG24 SNORD52 ATF6B VPS52 HLA-DQA1 SKIV2L APOM HLA-DMA LOC102725068 DDX39B-AS1 SAPCD1-AS1 LTB C6orf48 HSPA1L B3GALT4 BAG6 MIR6832 PPT2-EGFL8 DXO CYP21A2 C4B MCCD1 SNORA38 MIR219A1 HLA-DRB1 HLA-DPB1 AGER DDX39B SNORD117 C2-AS1 MIR6721 MIR5004 MIR3135B HLA-DQB2 RGL2 HLA-DPA1 HLA-DRB6 KIFC1 HLA-DOB LY6G6E TAPBP PPT2 PPP1R2P1 LSM2 CFB NCR3 PSMB9 HLA-DPB2 C4A C6orf47 RNF5 AGPAT1 STK19 HLA-DQB1 CLIC1
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss C6orf10 LY6G6C SNORD48 SNORD52 CYP21A1P DDAH2 ATF6B NELFE ATP6V1G2-DDX39B PRRT1 LY6G6F SKIV2L APOM MICB LOC102725068 TNF SAPCD1 DDX39B-AS1 C2 SAPCD1-AS1 LTB HSPA1A TNXB C6orf48 LY6G5C HSPA1L TNXA BAG6 MSH5 MIR6832 PPT2-EGFL8 MIR4646 HCG26 DXO CYP21A2 C4B MIR1236 MCCD1 SNORA38 FKBPL MIR6891 LTA ZBTB12 BTNL2 HLA-B ATP6V1G2 HLA-DRA AGER CSNK2B DDX39B NOTCH4 ABHD16A SNORD117 C2-AS1 HCG23 NEU1 MIR6721 MIR6833 GPANK1 LY6G6D LOC101929163 NFKBIL1 LOC100507547 GPSM3 MSH5-SAPCD1 EGFL8 EHMT2 LY6G6E PPT2 LST1 LSM2 CFB AIF1 NCR3 PRRC2A VARS C4A C6orf47 HCP5 SNORD84 C6orf25 LY6G5B RNF5 VWA7 SLC44A4 AGPAT1 LOC100287329 STK19 HSPA1B PBX2 CLIC1 MICA

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