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See other HLA-DMA CNV Assays ›
Gene Symbol
HLA-DMA
Assay Reference Genome
Location

Chr.6:32950165 on build GRCh38
Cytoband
6p21.32
Assay ID Hs03605834_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 3108

Gene Name:

 major histocompatibility complex, class II, DM alpha

Gene Aliases:

 D6S222E, DMA, HLADM, RING6

Location:

 Chr.6:32948614-32953122 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
HLA-DMA NM_006120.3 NP_006111.2
AK291858.1
AK298081.1 3 762
AU100342.1
BC011447.1 AAH11447.1
BC026279.1 AAH26279.1
CR450324.1 CAG29320.1
X62744.1 CAA44606.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2759417 Chr.6:32898012 - 32996319 on Build GRCh38 Gain HLA-DMB HLA-DMA LOC100294145 BRD2
nsv483081 Chr.6:32882976 - 33031504 on Build GRCh38 Loss HLA-DMB HLA-DMA LOC100294145 BRD2 HLA-DOA
nsv1161376 Chr.6:32913750 - 32953997 on Build GRCh38 Duplication HLA-DMB HLA-DMA
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion VWA7 TAP1 RNF5 CFB KIFC1 SNORD117 HLA-DOB PPP1R2P1 SNORD48 HLA-DRB6 HLA-DMB LOC100294145 MIR5004 GPANK1 MIR4646 HLA-DQB2 PSMB8-AS1 HCG25 LY6G6E MIR3135B MSH5-SAPCD1 HSD17B8 HCG24 PPT2 COL11A2 ATP6V1G2 MIR6833 NELFE RPS18 MIR6721 FKBPL AGPAT1 CSNK2B PFDN6 HCG23 APOM RXRB NOTCH4 MICB MCCD1 HLA-DRB5 SAPCD1 PRRC2A PHF1 C6orf48 TNF DDX39B TNXB HLA-DQA2 PRRT1 LSM2 PSMB9 C2-AS1 PBX2 HLA-DMA CUTA HCP5 TAPBP LOC100287329 HLA-DPB1 NCR3 DXO SNORD84 SYNGAP1 PSMB8 SLC44A4 LST1 MIR219A1 CLIC1 ZBTB12 BTNL2 SKIV2L LY6G6F SNORA38 MIR6834 HLA-DRB1 MSH5 AIF1 NEU1 TAP2 HLA-DOA HLA-DRA HLA-DQB1-AS1 MIR6873 STK19 SAPCD1-AS1 HLA-DQB1 LTA LY6G6C C6orf10 VPS52 LOC101929163 ABHD16A MIR6832 LY6G6D EHMT2 HSPA1A LY6G5B HSPA1L NFKBIL1 DDX39B-AS1 ZBTB9 C4A CYP21A2 BAG6 LY6G5C PPT2-EGFL8 WDR46 C2 RING1 SLC39A7 RGL2 LTB HLA-DPB2 CYP21A1P HLA-DQA1 ZBTB22 AGER LOC102725068 DDAH2 C4B GPSM3 SNORD52 C6orf47 ATF6B HLA-DPA1 VARS ATP6V1G2-DDX39B DAXX LOC100507547 HCG26 TNXA BRD2 HSPA1B EGFL8 C6orf25 MIR1236 B3GALT4
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion VWA7 TAP1 RNF5 CFB KIFC1 SNORD117 HLA-DOB PPP1R2P1 SNORD48 HLA-DRB6 HLA-DMB LOC100294145 MIR5004 GPANK1 MIR4646 HLA-DQB2 PSMB8-AS1 HCG25 LY6G6E MIR3135B MSH5-SAPCD1 HSD17B8 HCG24 PPT2 COL11A2 ATP6V1G2 MIR6833 NELFE RPS18 MIR6721 FKBPL AGPAT1 CSNK2B PFDN6 HCG23 APOM RXRB NOTCH4 MICB MCCD1 HLA-DRB5 SAPCD1 PRRC2A PHF1 C6orf48 TNF DDX39B TNXB HLA-DQA2 PRRT1 LSM2 PSMB9 C2-AS1 PBX2 HLA-DMA CUTA HCP5 TAPBP LOC100287329 HLA-DPB1 NCR3 DXO SNORD84 SYNGAP1 PSMB8 SLC44A4 LST1 MIR219A1 CLIC1 ZBTB12 BTNL2 SKIV2L LY6G6F SNORA38 MIR6834 HLA-DRB1 MSH5 AIF1 NEU1 TAP2 HLA-DOA HLA-DRA HLA-DQB1-AS1 MIR6873 STK19 SAPCD1-AS1 HLA-DQB1 LTA LY6G6C C6orf10 VPS52 LOC101929163 ABHD16A MIR6832 LY6G6D EHMT2 HSPA1A LY6G5B HSPA1L NFKBIL1 DDX39B-AS1 ZBTB9 C4A CYP21A2 BAG6 LY6G5C PPT2-EGFL8 WDR46 C2 RING1 SLC39A7 RGL2 LTB HLA-DPB2 CYP21A1P HLA-DQA1 ZBTB22 AGER LOC102725068 DDAH2 C4B GPSM3 SNORD52 C6orf47 ATF6B HLA-DPA1 VARS ATP6V1G2-DDX39B DAXX LOC100507547 HCG26 TNXA BRD2 HSPA1B EGFL8 C6orf25 MIR1236 B3GALT4
nsv830633 Chr.6:32829085 - 32995634 on Build GRCh38 Loss PSMB9 TAP1 HLA-DMB HLA-DMA LOC100294145 TAP2 BRD2 PSMB8 PSMB8-AS1 PPP1R2P1
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion ZBTB9 TAP1 KIFC1 WDR46 MIR6834 RING1 HLA-DOB PPP1R2P1 SLC39A7 RGL2 PHF1 HLA-DPB2 HLA-DMB HLA-DQA1 LOC100294145 TAP2 MIR5004 HLA-DOA HLA-DQB2 HLA-DQA2 HLA-DQB1-AS1 ZBTB22 PSMB8-AS1 MIR6873 HCG25 MIR3135B HSD17B8 HLA-DQB1 PSMB9 HCG24 COL11A2 HLA-DMA CUTA TAPBP HLA-DPB1 VPS52 SYNGAP1 PSMB8 RPS18 HLA-DPA1 DAXX MIR219A1 PFDN6 BRD2 RXRB B3GALT4

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