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Gene Symbol
GPT
Assay Reference Genome
Location

Chr.8:144503518 on build GRCh38
Cytoband
8q24.3
Assay ID Hs03665557_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2875

Gene Name:

 glutamic--pyruvic transaminase

Gene Aliases:

 AAT1, ALT1, GPT1

Location:

 Chr.8:144502217-144507174 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
GPT XM_011516993.2 XP_011515295.1
BC018207.1 AAH18207.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv470249 Chr.8:143889098 - 144519234 on Build GRCh38 Loss MIR6846 PPP1R16A MIR939 KIFC2 HSF1 LRRC14 MROH1 BOP1 SLC52A2 MAF1 RECQL4 TONSL MIR6849 FOXH1 MIR7112 CPSF1 MIR6848 ADCK5 WDR97 HGH1 PARP10 SHARPIN OPLAH GPT SCX LOC101928953 GRINA MIR6893 MIR6847 CYC1 SPATC1 TMEM249 MIR661 SLC39A4 VPS28 DGAT1 FBXL6 LOC101928902 CYHR1 MIR1234 MFSD3 TONSL-AS1 GPAA1 SCRT1 SMPD5 EXOSC4 PLEC
nsv612951 Chr.8:144479830 - 144677692 on Build GRCh38 Loss LRRC24 PPP1R16A ARHGAP39 RECQL4 C8orf82 GPT LOC101928953 MFSD3 LRRC14
esv3619130 Chr.8:144500159 - 144504908 on Build GRCh38 Gain PPP1R16A GPT LOC101928953
nsv831489 Chr.8:144342140 - 144544026 on Build GRCh38 Loss PPP1R16A MIR939 KIFC2 LRRC14 LRRC24 SLC52A2 ARHGAP39 RECQL4 TONSL MIR6849 FOXH1 CPSF1 ADCK5 C8orf82 GPT LOC101928953 MIR6893 TMEM249 SLC39A4 VPS28 FBXL6 LOC101928902 CYHR1 MIR1234 MFSD3 TONSL-AS1
dgv1207n67 Chr.8:144498396 - 144532417 on Build GRCh38 Gain LRRC24 PPP1R16A ARHGAP39 RECQL4 C8orf82 GPT LOC101928953 MFSD3 LRRC14
dgv12439n54 Chr.8:144438306 - 144525122 on Build GRCh38 Loss LRRC24 PPP1R16A RECQL4 TONSL KIFC2 CYHR1 FOXH1 GPT LOC101928953 MFSD3 TONSL-AS1 LRRC14
dgv907n27 Chr.8:144416180 - 144525122 on Build GRCh38 Loss PPP1R16A KIFC2 GPT LOC101928953 MIR6893 LRRC14 LRRC24 SLC39A4 VPS28 RECQL4 TONSL CYHR1 FOXH1 MFSD3 TONSL-AS1
dgv12442n54 Chr.8:144492696 - 144516381 on Build GRCh38 Loss PPP1R16A RECQL4 GPT LOC101928953 MFSD3
dgv12434n54 Chr.8:144270080 - 144516801 on Build GRCh38 Loss PPP1R16A MIR939 KIFC2 HSF1 BOP1 SLC52A2 RECQL4 TONSL MIR6849 FOXH1 CPSF1 MIR6848 ADCK5 GPT LOC101928953 MIR6893 TMEM249 SLC39A4 VPS28 DGAT1 FBXL6 LOC101928902 CYHR1 MIR1234 MFSD3 TONSL-AS1 SCRT1
dgv12443n54 Chr.8:144502322 - 144518490 on Build GRCh38 Loss RECQL4 GPT LOC101928953 MFSD3 LRRC14
nsv515809 Chr.8:143904439 - 144519234 on Build GRCh38 Gain+Loss MIR6846 PPP1R16A MIR939 KIFC2 HSF1 LRRC14 MROH1 BOP1 SLC52A2 MAF1 RECQL4 TONSL MIR6849 FOXH1 MIR7112 CPSF1 MIR6848 ADCK5 WDR97 HGH1 PARP10 SHARPIN OPLAH GPT SCX LOC101928953 GRINA MIR6893 MIR6847 CYC1 SPATC1 TMEM249 MIR661 SLC39A4 VPS28 DGAT1 FBXL6 LOC101928902 CYHR1 MIR1234 MFSD3 TONSL-AS1 GPAA1 SCRT1 SMPD5 EXOSC4 PLEC
nsv612940 Chr.8:144436292 - 144613673 on Build GRCh38 Loss PPP1R16A KIFC2 C8orf82 GPT LOC101928953 LRRC14 LRRC24 ARHGAP39 RECQL4 TONSL CYHR1 FOXH1 MFSD3 TONSL-AS1
nsv428208 Chr.8:144041826 - 144722291 on Build GRCh38 Gain MIR6846 PPP1R16A MIR939 KIFC2 HSF1 LRRC14 MROH1 ZNF251 BOP1 LRRC24 SLC52A2 MAF1 ARHGAP39 RECQL4 TONSL MIR6849 FOXH1 MIR7112 CPSF1 MIR6848 ADCK5 WDR97 HGH1 SHARPIN C8orf82 OPLAH GPT SCX LOC101928953 MIR6893 MIR6847 CYC1 SPATC1 TMEM249 SLC39A4 VPS28 DGAT1 FBXL6 LOC101928902 CYHR1 MIR1234 MFSD3 TONSL-AS1 GPAA1 SCRT1 SMPD5 EXOSC4
esv29999 Chr.8:144456732 - 144525122 on Build GRCh38 Loss LRRC24 PPP1R16A RECQL4 KIFC2 CYHR1 FOXH1 GPT LOC101928953 MFSD3 LRRC14

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More Information


Additional Information:

For this assay, SNP(s) [rs80017057] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

transaminase

Gene Ontology Categories:

Function(s) Process(es)


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