Hs03701435_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136684476 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1			NP_001012745.1
	NM_006412.3			NP_006403.2
	AF000237.1			AAC51649.1
	AF011374.1			AAB64299.1
	BC000026.2			AAH00026.1
	BC004529.2			AAH04529.1
	BC019292.1			AAH19292.1
	BF347518.1
	CN407343.1
	U56418.2			AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	HSPC324 EGFL7 LINC01451 AGPAT2 MIR126
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	HSPC324 EGFL7 NOTCH1 SNHG7 LINC01451 FAM69B NALT1 MIR4674 AGPAT2 MIR4673 MIR126
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	MIR6722 SNORA17A EGFL7 SNORA17B LCN8 SNHG7 LCN10 LCN6 MIR126 HSPC324 LINC01451 FAM69B LOC100128593 AGPAT2 LCN15
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	FUT7 PRR31 LINC01451 C9orf163 MIR4674 CCDC183-AS1 CARD9 LCN12 EGFL7 LCN8 SNHG7 CCDC183 LOC101930307 DPP7 LCN6 MAN1B1-AS1 FBXW5 MIR4479 ABCA2 HSPC324 TMEM141 TRAF2 MIR4292 EDF1 PTGDS SNORA17A MAN1B1 SNORA17B C9orf172 GRIN1 DNLZ CLIC3 LCNL1 MIR4673 ENTPD2 MAMDC4 C9orf139 FAM69B LOC100128593 SEC16A PHPT1 NALT1 AGPAT2 NPDC1 SNAPC4 UAP1L1 MIR6722 NOTCH1 LRRC26 LCN10 SAPCD2 C8G SDCCAG3 C9orf142 MIR3621 MIR126 TMEM210 INPP5E PMPCA RABL6 LCN15
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	SNORA17A SNORA17B C9orf172 GPSM1 DNLZ MIR4673 MAMDC4 LINC01451 C9orf163 FAM69B LOC100128593 SEC16A PHPT1 NALT1 MIR4674 AGPAT2 CCDC183-AS1 CARD9 SNAPC4 MIR6722 EGFL7 LCN8 NOTCH1 SNHG7 CCDC183 LCN10 LCN6 MIR4479 SDCCAG3 MIR126 HSPC324 TMEM141 TRAF2 INPP5E PMPCA RABL6 LCN15 MIR4292 EDF1
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	MIR6722 SNORA17A EGFL7 SNORA17B LCN8 NOTCH1 SNHG7 LCN10 LCN6 MIR4673 MIR126 HSPC324 LINC01451 FAM69B LOC100128593 NALT1 MIR4674 AGPAT2 LCN15
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	HSPC324 EGFL7 LINC01451 FAM69B AGPAT2 MIR126
dgv957n27	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	HSPC324 EGFL7 SNHG7 FAM69B AGPAT2 MIR126
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	TUBB4B SLC34A3 FUT7 RNF224 PRR31 LINC01451 SSNA1 CCDC183-AS1 NDOR1 LCN12 EGFL7 LCN8 SNHG7 CCDC183 LOC101930307 DPP7 LCN6 MAN1B1-AS1 FBXW5 MIR4479 ABCA2 HSPC324 TMEM141 ANAPC2 TRAF2 C9orf173-AS1 MIR4292 EDF1 PTGDS SNORA17A MAN1B1 SNORA17B C9orf172 NELFB GRIN1 CLIC3 STPG3 LCNL1 TMEM203 ENTPD2 MAMDC4 C9orf139 TPRN FAM69B LOC100128593 PHPT1 AGPAT2 NPDC1 RNF208 UAP1L1 MIR6722 CYSRT1 EXD3 LRRC26 LCN10 SAPCD2 FAM166A C8G C9orf142 MIR3621 MIR126 NRARP TMEM210 RABL6 LCN15 TOR4A

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity