Hs03709897_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136683667 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1			NP_001012745.1
	NM_006412.3			NP_006403.2
	AF000237.1			AAC51649.1
	AF011374.1			AAB64299.1
	BC000026.2			AAH00026.1
	BC004529.2			AAH04529.1
	BC019292.1			AAH19292.1
	BF347518.1
	CN407343.1
	U56418.2			AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	LINC01451 HSPC324 MIR126 EGFL7 AGPAT2
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	NOTCH1 FAM69B LINC01451 NALT1 HSPC324 SNHG7 MIR4674 MIR126 MIR4673 EGFL7 AGPAT2
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	LCN15 HSPC324 LCN6 LOC100128593 LCN10 MIR6722 FAM69B LINC01451 SNORA17B LCN8 SNHG7 MIR126 EGFL7 SNORA17A AGPAT2
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	C9orf172 NPDC1 MAN1B1 CCDC183-AS1 LCN6 PMPCA MIR4673 LOC100128593 DNLZ CCDC183 LCN12 FAM69B SAPCD2 C8G EDF1 SNORA17A RABL6 C9orf142 CLIC3 ENTPD2 PHPT1 SEC16A NOTCH1 LRRC26 FBXW5 GRIN1 EGFL7 ABCA2 MAN1B1-AS1 MAMDC4 SNAPC4 TRAF2 UAP1L1 C9orf139 MIR4292 CARD9 NALT1 LOC101930307 PRR31 SNORA17B LCN8 PTGDS INPP5E AGPAT2 LCNL1 LCN15 HSPC324 MIR4479 MIR4674 C9orf163 TMEM210 LCN10 TMEM141 MIR6722 LINC01451 FUT7 SNHG7 SDCCAG3 DPP7 MIR126 MIR3621
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	C9orf172 MAMDC4 SNAPC4 CCDC183-AS1 LCN6 PMPCA TRAF2 MIR4673 LOC100128593 MIR4292 DNLZ CCDC183 FAM69B CARD9 NALT1 SNORA17B LCN8 EDF1 SNORA17A INPP5E AGPAT2 RABL6 LCN15 HSPC324 MIR4479 MIR4674 C9orf163 PHPT1 GPSM1 SEC16A LCN10 TMEM141 NOTCH1 MIR6722 LINC01451 SNHG7 SDCCAG3 MIR126 EGFL7
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	LCN15 HSPC324 MIR4674 LCN6 MIR4673 LOC100128593 LCN10 NOTCH1 MIR6722 FAM69B LINC01451 NALT1 SNORA17B LCN8 SNHG7 MIR126 EGFL7 SNORA17A AGPAT2
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	FAM69B LINC01451 HSPC324 MIR126 EGFL7 AGPAT2
dgv957n27	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	FAM69B HSPC324 SNHG7 MIR126 EGFL7 AGPAT2
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	C9orf172 NPDC1 MAN1B1 CCDC183-AS1 LCN6 LOC100128593 TOR4A TUBB4B CCDC183 LCN12 FAM69B NDOR1 SAPCD2 C8G EDF1 SNORA17A RABL6 C9orf142 CLIC3 ENTPD2 STPG3 RNF208 PHPT1 LRRC26 FBXW5 NRARP NELFB GRIN1 EGFL7 ABCA2 TPRN MAN1B1-AS1 EXD3 MAMDC4 ANAPC2 TRAF2 UAP1L1 C9orf139 MIR4292 LOC101930307 PRR31 SNORA17B LCN8 PTGDS CYSRT1 AGPAT2 LCNL1 FAM166A LCN15 HSPC324 MIR4479 TMEM210 LCN10 TMEM141 MIR6722 TMEM203 LINC01451 FUT7 RNF224 SNHG7 DPP7 MIR126 MIR3621 C9orf173-AS1 SSNA1 SLC34A3

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity