Hs03720162_cn

• Gene Symbol: AGPAT2
• Assay Reference Genome Location: Chr.9:136678406 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 10555
• Gene Name: 1-acylglycerol-3-phosphate O-acyltransferase 2
• Gene Aliases: 1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta
• Location: Chr.9:136673143-136687459 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
AGPAT2	NM_001012727.1			NP_001012745.1
	NM_006412.3			NP_006403.2
	AF000237.1			AAC51649.1
	AF011374.1			AAB64299.1
	BC000026.2			AAH00026.1
	BC004529.2			AAH04529.1
	BC019292.1			AAH19292.1
	BF347518.1
	CN407343.1
	U56418.2			AAB58776.2

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13005n54	Chr.9:136605258 - 136696482 on Build GRCh38	Loss	AGPAT2 MIR126 LINC01451 EGFL7 HSPC324
nsv509334	Chr.9:136514168 - 136724663 on Build GRCh38	Insertion	MIR4673 AGPAT2 NALT1 MIR126 FAM69B NOTCH1 MIR4674 LINC01451 SNHG7 EGFL7 HSPC324
nsv951203	Chr.9:136562849 - 136770848 on Build GRCh38	Deletion	FAM69B LINC01451 SNHG7 MIR6722 SNORA17B SNORA17A AGPAT2 MIR126 LCN8 LCN10 LOC100128593 LCN6 LCN15 EGFL7 HSPC324
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	MAN1B1-AS1 SAPCD2 DPP7 PMPCA LOC100128593 LCN15 SNAPC4 LCNL1 RABL6 INPP5E C8G C9orf172 ENTPD2 MIR3621 NOTCH1 PTGDS LINC01451 LRRC26 SNHG7 ABCA2 MIR6722 SNORA17B C9orf139 UAP1L1 TMEM141 LCN6 NPDC1 TRAF2 DNLZ CCDC183-AS1 PHPT1 MIR4673 SEC16A MIR4674 MIR4479 MIR4292 NALT1 MIR126 FUT7 LCN10 FBXW5 CCDC183 GRIN1 LCN12 MAN1B1 EDF1 SDCCAG3 FAM69B C9orf142 SNORA17A CARD9 AGPAT2 PRR31 LCN8 MAMDC4 C9orf163 LOC101930307 EGFL7 TMEM210 HSPC324 CLIC3
esv2759720	Chr.9:136356377 - 136932033 on Build GRCh38	Loss	MIR4673 SEC16A MIR4674 MIR4479 GPSM1 MIR4292 NALT1 MIR126 LCN10 PMPCA LOC100128593 CCDC183 LCN15 SNAPC4 RABL6 INPP5E C9orf172 EDF1 SDCCAG3 FAM69B NOTCH1 LINC01451 SNHG7 MIR6722 SNORA17B SNORA17A CARD9 AGPAT2 LCN8 TMEM141 LCN6 MAMDC4 C9orf163 TRAF2 DNLZ EGFL7 CCDC183-AS1 PHPT1 HSPC324
nsv8579	Chr.9:136505432 - 136760256 on Build GRCh38	Gain	MIR4673 FAM69B NOTCH1 MIR4674 LINC01451 SNHG7 MIR6722 SNORA17B SNORA17A AGPAT2 NALT1 MIR126 LCN8 LCN10 LOC100128593 LCN6 LCN15 EGFL7 HSPC324
nsv1053781	Chr.9:136590694 - 136722927 on Build GRCh38	Gain	AGPAT2 MIR126 FAM69B LINC01451 EGFL7 HSPC324
dgv957n27	Chr.9:136619086 - 136725859 on Build GRCh38	Loss	AGPAT2 MIR126 FAM69B SNHG7 EGFL7 HSPC324
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	NRARP MAN1B1-AS1 SAPCD2 DPP7 LOC100128593 LCN15 CYSRT1 LCNL1 RABL6 C8G C9orf172 ENTPD2 MIR3621 TMEM203 PTGDS LINC01451 LRRC26 SNHG7 ABCA2 MIR6722 SNORA17B C9orf139 SSNA1 UAP1L1 TPRN SLC34A3 TMEM141 LCN6 NPDC1 TRAF2 CCDC183-AS1 PHPT1 EXD3 MIR4479 MIR4292 MIR126 FUT7 LCN10 NELFB FBXW5 C9orf173-AS1 CCDC183 NDOR1 GRIN1 ANAPC2 RNF208 LCN12 MAN1B1 RNF224 EDF1 FAM69B C9orf142 FAM166A TUBB4B STPG3 SNORA17A AGPAT2 PRR31 LCN8 MAMDC4 LOC101930307 TOR4A EGFL7 TMEM210 HSPC324 CLIC3

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

acyltransferase

Gene Ontology Categories:

Process(es)

positive regulation of cytokine production
positive regulation of cytokine-mediated signaling pathway
phospholipid metabolic process
phosphatidic acid biosynthetic process
epidermis development
CDP-diacylglycerol biosynthetic process
triglyceride biosynthetic process
response to antidepressant

Function(s)

1-acylglycerol-3-phosphate O-acyltransferase activity