Hs03727007_cn

• Gene Symbol: ADGRA1
• Assay Reference Genome Location: Chr.10:133092928 on build GRCh38
• Cytoband: 10q26.3

Target Gene Details

• Entrez Gene ID: 84435
• Gene Name: adhesion G protein-coupled receptor A1
• Gene Aliases: GPR123
• Location: Chr.10:133070929-133131675 on Build GRCh38
• Assay Gene Location: Within Intron 10

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
ADGRA1	NM_001083909.2			NP_001077378.1
	XM_005252695.1			XP_005252752.1
	XM_017016779.1			XP_016872268.1
	AK124728.1
	AY181241.1			AAO27353.1
	BG818167.1
	CB045391.1
	DA208698.1
	EF536972.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2759793	Chr.10:133030918 - 133619181 on Build GRCh38	Gain+Loss	SPRN SPRNP1 ECHS1 CYP2E1 ADGRA1 UTF1 MIR202 ADGRA1-AS1 ZNF511 VENTX TUBGCP2 SCART1 MIR3944 MTG1 ADAM8 PRAP1 MIR202HG CALY SYCE1 FUOM PAOX KNDC1
dgv998n100	Chr.10:132998894 - 133170978 on Build GRCh38	Gain	ADGRA1 ADGRA1-AS1 KNDC1
esv3625022	Chr.10:132998655 - 133120915 on Build GRCh38	Gain	ADGRA1 ADGRA1-AS1
esv3625015	Chr.10:132889012 - 133114687 on Build GRCh38	Gain	LINC01167 ADGRA1 ADGRA1-AS1 LINC01166 LINC01168 CFAP46
nsv470979	Chr.10:133033478 - 133118280 on Build GRCh38	Loss	ADGRA1 ADGRA1-AS1
nsv552526	Chr.10:132699017 - 133103793 on Build GRCh38	Gain	LINC01167 ADGRA1 INPP5A ADGRA1-AS1 LINC01166 LINC01168 NKX6-2 CFAP46
nsv552540	Chr.10:133085338 - 133102541 on Build GRCh38	Loss	ADGRA1 ADGRA1-AS1
nsv552539	Chr.10:133061918 - 133103793 on Build GRCh38	Loss	ADGRA1 ADGRA1-AS1
nsv467498	Chr.10:132900981 - 133134139 on Build GRCh38	Gain	LINC01167 ADGRA1 ADGRA1-AS1 LINC01166 LINC01168 CFAP46
nsv1054934	Chr.10:130334322 - 133158679 on Build GRCh38	Gain	LINC01167 PPP2R2D ADGRA1 INPP5A MIR378C ADGRA1-AS1 LRRC27 LINC01166 STK32C DPYSL4 CFAP46 BNIP3 JAKMIP3 TCERG1L-AS1 C10orf91 TCERG1L LINC01164 LOC105378568 LINC01168 PWWP2B NKX6-2 LOC107984282
nsv528260	Chr.10:132859348 - 133620799 on Build GRCh38	Loss	SPRN SPRNP1 MIR202 ADGRA1-AS1 ZNF511 VENTX SCART1 CFAP46 SYCE1 FUOM LINC01167 ECHS1 CYP2E1 ADGRA1 UTF1 LINC01166 TUBGCP2 MIR3944 MTG1 ADAM8 PRAP1 MIR202HG CALY LINC01168 PAOX KNDC1
nsv832036	Chr.10:133089509 - 133368232 on Build GRCh38	Loss	ECHS1 ADGRA1 UTF1 MIR202 ZNF511 VENTX TUBGCP2 ADAM8 PRAP1 MIR202HG CALY FUOM KNDC1
nsv952703	Chr.10:133037897 - 133143896 on Build GRCh38	Deletion	ADGRA1 ADGRA1-AS1

More Information

Additional Information:

For this assay, SNP(s) [rs116705421] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

G-protein coupled receptor

Gene Ontology Categories:

Process(es)

signal transduction
cell surface receptor signaling pathway
G-protein coupled receptor signaling pathway

Function(s)

G-protein coupled receptor activity