Hs03782041_cn

• Gene Symbol: LOC101059906
• Assay Reference Genome Location: Chr.11:530076 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 101059906
• Gene Name: collagen alpha-2(IV) chain-like
• Gene Aliases: -
• Location: Chr.11:528484-532263 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC101059906	XM_003959933.4			XP_003959982.2

Target Gene Details

• Entrez Gene ID: 115399
• Gene Name: leucine rich repeat containing 56
• Gene Aliases: -
• Location: Chr.11:518967-554916 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LRRC56	XM_011519875.2			XP_011518177.1
	XM_011519877.2			XP_011518179.1
	XM_017017167.1			XP_016872656.1
	XM_017017168.1			XP_016872657.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv467634	Chr.11:511805 - 619789 on Build GRCh38	Loss	PHRF1 CDHR5 RASSF7 MIR210 LRRC56 IRF7 HRAS MIR210HG LOC101059906 LOC143666 LMNTD2
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	CDHR5 ANO9 LRRC56 IRF7 IFITM3 IFITM1 MIR210HG PTDSS2 SIGIRR IFITM2 LOC101059906 PKP3 PGGHG B4GALNT4 PHRF1 RASSF7 MIR210 IFITM5 HRAS RNH1 LOC143666 LMNTD2
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	PHRF1 CDHR5 RASSF7 SCT MIR210 LRRC56 IRF7 HRAS MIR210HG LOC101059906 LOC143666 LMNTD2
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	PANO1 ANO9 SCT DRD4 CHID1 LOC101927503 PIDD1 LRRC56 IRF7 PDDC1 DEAF1 CRACR2B MIR210HG LOC171391 RPLP2 B4GALNT4 PHRF1 RASSF7 MIR210 POLR2L EPS8L2 SNORA52 MUC2 MUC6 PNPLA2 TMEM80 LOC143666 CDHR5 TALDO1 MUC5AC MUC5B PTDSS2 SIGIRR LOC101059906 PKP3 MIR6744 TSPAN4 AP2A2 CD151 CEND1 HRAS TOLLIP RNH1 SLC25A22 LMNTD2
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	PANO1 ANO9 SCT DRD4 CHID1 LOC101927503 PIDD1 LRRC56 IRF7 PDDC1 DEAF1 CRACR2B MIR210HG LOC171391 RPLP2 PHRF1 RASSF7 MIR210 TOLLIP-AS1 POLR2L EPS8L2 SNORA52 MUC2 MUC6 PNPLA2 TMEM80 LOC143666 CDHR5 TALDO1 MUC5AC MUC5B PTDSS2 SIGIRR LOC101059906 MIR6744 TSPAN4 AP2A2 CD151 CEND1 HRAS TOLLIP RNH1 SLC25A22 LMNTD2
esv33673	Chr.11:528525 - 530251 on Build GRCh38	Gain	LRRC56 LOC101059906
esv3366265	Chr.11:528252 - 531250 on Build GRCh38	Duplication	LRRC56 LOC101059906
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	CDHR5 SCT DRD4 LRRC56 IRF7 DEAF1 MIR210HG PTDSS2 LOC101059906 PHRF1 RASSF7 MIR210 HRAS RNH1 LOC143666 LMNTD2
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	PANO1 ANO9 SCT DRD4 CHID1 PIDD1 LRRC56 IRF7 PDDC1 DEAF1 CRACR2B MIR210HG LOC171391 RPLP2 B4GALNT4 PHRF1 RASSF7 MIR210 POLR2L EPS8L2 SNORA52 PNPLA2 TMEM80 LOC143666 CDHR5 TALDO1 PTDSS2 SIGIRR LOC101059906 PKP3 TSPAN4 AP2A2 CD151 CEND1 HRAS RNH1 SLC25A22 LMNTD2
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	PANO1 SCT DRD4 CHID1 PIDD1 LRRC56 IRF7 PDDC1 DEAF1 CRACR2B MIR210HG LOC171391 RPLP2 PHRF1 RASSF7 MIR210 POLR2L EPS8L2 SNORA52 PNPLA2 TMEM80 LOC143666 CDHR5 TALDO1 PTDSS2 LOC101059906 TSPAN4 CD151 CEND1 HRAS RNH1 SLC25A22 LMNTD2

More Information

Additional Information:

For this assay, SNP(s) [rs115456410] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

extracellular matrix structural protein