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See other LRRC56 CNV Assays ›
Gene Symbol
LRRC56
Assay Reference Genome
Location

Chr.11:519126 on build GRCh38
Cytoband
11p15.5
Assay ID Hs03784587_cn
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Assay Details

Target Gene Details

Entrez Gene ID:

 115399

Gene Name:

 leucine rich repeat containing 56

Gene Aliases:

 -

Location:

 Chr.11:518967-554916 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 1 - Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LRRC56 XM_011519875.2 XP_011518177.1
XM_011519877.2 XP_011518179.1
XM_017017167.1 XP_016872656.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv467634 Chr.11:511805 - 619789 on Build GRCh38 Loss PHRF1 LOC101059906 RASSF7 LRRC56 LMNTD2 CDHR5 IRF7 MIR210HG MIR210 HRAS LOC143666
nsv527327 Chr.11:295343 - 620599 on Build GRCh38 Loss B4GALNT4 PKP3 LOC101059906 RASSF7 ANO9 PTDSS2 MIR210 HRAS LOC143666 RNH1 SIGIRR PGGHG PHRF1 IFITM2 LRRC56 LMNTD2 CDHR5 IFITM3 IRF7 IFITM1 IFITM5 MIR210HG
nsv469923 Chr.11:378188 - 1302334 on Build GRCh38 Loss B4GALNT4 PDDC1 LOC101059906 RASSF7 CRACR2B SNORA52 TALDO1 PTDSS2 MIR210 HRAS MIR6744 LOC143666 SIGIRR EPS8L2 LRRC56 LMNTD2 LOC171391 DEAF1 CD151 MIR210HG MUC2 PIDD1 POLR2L PKP3 DRD4 AP2A2 CHID1 SLC25A22 PNPLA2 ANO9 MUC5B TSPAN4 CEND1 MUC6 RNH1 PHRF1 CDHR5 PANO1 LOC101927503 IRF7 TOLLIP RPLP2 TMEM80 SCT MUC5AC
esv2759794 Chr.11:409846 - 1336162 on Build GRCh38 Loss PDDC1 LOC101059906 RASSF7 CRACR2B SNORA52 TALDO1 PTDSS2 MIR210 HRAS MIR6744 LOC143666 SIGIRR EPS8L2 LRRC56 LMNTD2 LOC171391 DEAF1 CD151 TOLLIP-AS1 MIR210HG MUC2 PIDD1 POLR2L DRD4 AP2A2 CHID1 SLC25A22 PNPLA2 ANO9 MUC5B TSPAN4 CEND1 MUC6 RNH1 PHRF1 CDHR5 PANO1 LOC101927503 IRF7 TOLLIP RPLP2 TMEM80 SCT MUC5AC
nsv1053964 Chr.11:491334 - 692433 on Build GRCh38 Gain DRD4 LOC101059906 RASSF7 PTDSS2 MIR210 HRAS LOC143666 RNH1 PHRF1 LRRC56 LMNTD2 CDHR5 DEAF1 IRF7 MIR210HG SCT
dgv182e199 Chr.11:349830 - 943372 on Build GRCh38 Deletion B4GALNT4 PDDC1 LOC101059906 RASSF7 CRACR2B SNORA52 TALDO1 PTDSS2 MIR210 HRAS LOC143666 SIGIRR EPS8L2 LRRC56 LMNTD2 LOC171391 DEAF1 CD151 MIR210HG PIDD1 POLR2L PKP3 DRD4 AP2A2 CHID1 SLC25A22 PNPLA2 ANO9 TSPAN4 CEND1 RNH1 PHRF1 CDHR5 PANO1 IRF7 RPLP2 TMEM80 SCT
dgv541e59 Chr.11:519152 - 520350 on Build GRCh38 Duplication LRRC56
nsv1159791 Chr.11:461793 - 909492 on Build GRCh38 Deletion PDDC1 LOC101059906 RASSF7 CRACR2B SNORA52 TALDO1 PTDSS2 MIR210 HRAS LOC143666 EPS8L2 LRRC56 LMNTD2 LOC171391 DEAF1 CD151 MIR210HG PIDD1 POLR2L DRD4 CHID1 SLC25A22 PNPLA2 TSPAN4 CEND1 RNH1 PHRF1 CDHR5 PANO1 IRF7 RPLP2 TMEM80 SCT

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More Information


Additional Information:

For this assay, SNP(s) [rs72841204] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

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