Hs03801164_cn

• Gene Symbol: LOC101059906
• Assay Reference Genome Location: Chr.11:529459 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 101059906
• Gene Name: collagen alpha-2(IV) chain-like
• Gene Aliases: -
• Location: Chr.11:528484-532263 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC101059906	XM_003959933.4			XP_003959982.2

Target Gene Details

• Entrez Gene ID: 115399
• Gene Name: leucine rich repeat containing 56
• Gene Aliases: -
• Location: Chr.11:518967-554916 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LRRC56	XM_011519875.2			XP_011518177.1
	XM_011519877.2			XP_011518179.1
	XM_017017167.1			XP_016872656.1
	XM_017017168.1			XP_016872657.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv467634	Chr.11:511805 - 619789 on Build GRCh38	Loss	LOC101059906 RASSF7 PHRF1 LOC143666 MIR210 LRRC56 LMNTD2 HRAS CDHR5 MIR210HG IRF7
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	IFITM5 SIGIRR ANO9 LOC143666 MIR210 IFITM3 PKP3 LRRC56 CDHR5 LOC101059906 PTDSS2 IFITM1 RASSF7 PHRF1 IFITM2 RNH1 B4GALNT4 LMNTD2 HRAS MIR210HG PGGHG IRF7
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	LOC101059906 RASSF7 PHRF1 SCT LOC143666 MIR210 LRRC56 LMNTD2 HRAS CDHR5 MIR210HG IRF7
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	RPLP2 TALDO1 LOC171391 ANO9 LOC143666 MUC5AC CEND1 DRD4 CHID1 LRRC56 TOLLIP PANO1 LOC101059906 PTDSS2 DEAF1 RASSF7 AP2A2 PDDC1 B4GALNT4 PIDD1 LMNTD2 IRF7 SIGIRR MIR210 PKP3 MIR6744 MUC6 PNPLA2 CDHR5 POLR2L SNORA52 PHRF1 SCT MUC2 TMEM80 RNH1 SLC25A22 CRACR2B EPS8L2 MUC5B HRAS LOC101927503 TSPAN4 CD151 MIR210HG
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	RPLP2 TALDO1 LOC171391 ANO9 LOC143666 MUC5AC CEND1 DRD4 CHID1 LRRC56 TOLLIP PANO1 LOC101059906 PTDSS2 DEAF1 RASSF7 AP2A2 PDDC1 PIDD1 LMNTD2 IRF7 SIGIRR MIR210 MIR6744 MUC6 PNPLA2 CDHR5 POLR2L SNORA52 PHRF1 SCT MUC2 TMEM80 RNH1 SLC25A22 CRACR2B EPS8L2 TOLLIP-AS1 MUC5B HRAS LOC101927503 TSPAN4 CD151 MIR210HG
esv33673	Chr.11:528525 - 530251 on Build GRCh38	Gain	LOC101059906 LRRC56
esv3366265	Chr.11:528252 - 531250 on Build GRCh38	Duplication	LOC101059906 LRRC56
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	LOC143666 MIR210 DRD4 LRRC56 CDHR5 LOC101059906 PTDSS2 DEAF1 RASSF7 PHRF1 SCT RNH1 LMNTD2 HRAS MIR210HG IRF7
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	RPLP2 TALDO1 LOC171391 ANO9 LOC143666 CEND1 DRD4 CHID1 LRRC56 PANO1 LOC101059906 PTDSS2 DEAF1 RASSF7 AP2A2 PDDC1 B4GALNT4 PIDD1 LMNTD2 IRF7 SIGIRR MIR210 PKP3 PNPLA2 CDHR5 POLR2L SNORA52 PHRF1 SCT TMEM80 RNH1 SLC25A22 CRACR2B EPS8L2 HRAS TSPAN4 CD151 MIR210HG
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	RPLP2 TALDO1 LOC171391 LOC143666 CEND1 DRD4 CHID1 LRRC56 PANO1 LOC101059906 PTDSS2 DEAF1 RASSF7 PDDC1 PIDD1 LMNTD2 IRF7 MIR210 PNPLA2 CDHR5 POLR2L SNORA52 PHRF1 SCT TMEM80 RNH1 SLC25A22 CRACR2B EPS8L2 HRAS TSPAN4 CD151 MIR210HG

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

extracellular matrix structural protein