Hs03802131_cn

• Gene Symbol: LRRC56
• Assay Reference Genome Location: Chr.11:537479 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 115399
• Gene Name: leucine rich repeat containing 56
• Gene Aliases: -
• Location: Chr.11:518967-554916 on Build GRCh38
• Assay Gene Location: Within Exon 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LRRC56	NM_198075.3			NP_932341.1
	XM_005252775.2	1	779	XP_005252832.1
	XM_005252776.2	1	779	XP_005252833.1
	XM_006718132.2	1	779	XP_006718195.1
	XM_011519875.2			XP_011518177.1
	XM_011519876.1	1	779	XP_011518178.1
	XM_011519877.2			XP_011518179.1
	XM_017017167.1			XP_016872656.1
	XM_017017168.1			XP_016872657.1
	AK024495.1	1	839	BAB15785.1
	BC035937.1			AAH35937.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv467634	Chr.11:511805 - 619789 on Build GRCh38	Loss	LOC101059906 IRF7 LMNTD2 MIR210 RASSF7 LOC143666 PHRF1 CDHR5 HRAS LRRC56 MIR210HG
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	IFITM5 PGGHG ANO9 LMNTD2 IFITM1 RASSF7 SIGIRR PHRF1 CDHR5 RNH1 IFITM2 PTDSS2 IFITM3 MIR210HG B4GALNT4 LOC101059906 IRF7 MIR210 LOC143666 HRAS LRRC56 PKP3
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	LOC101059906 IRF7 LMNTD2 MIR210 RASSF7 LOC143666 PHRF1 CDHR5 HRAS LRRC56 SCT MIR210HG
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	CHID1 PIDD1 LMNTD2 RASSF7 SIGIRR PHRF1 PTDSS2 MIR210HG B4GALNT4 LOC101059906 IRF7 RPLP2 DEAF1 TSPAN4 MIR210 MUC5B LOC171391 CRACR2B EPS8L2 HRAS PNPLA2 CEND1 PKP3 ANO9 PDDC1 SLC25A22 CD151 TMEM80 MIR6744 CDHR5 RNH1 LOC101927503 SNORA52 POLR2L MUC6 MUC2 LOC143666 MUC5AC AP2A2 TOLLIP DRD4 LRRC56 SCT PANO1 TALDO1
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	CHID1 PIDD1 LMNTD2 TOLLIP-AS1 RASSF7 SIGIRR PHRF1 PTDSS2 MIR210HG LOC101059906 IRF7 RPLP2 DEAF1 TSPAN4 MIR210 MUC5B LOC171391 CRACR2B EPS8L2 HRAS PNPLA2 CEND1 ANO9 PDDC1 SLC25A22 CD151 TMEM80 MIR6744 CDHR5 RNH1 LOC101927503 SNORA52 POLR2L MUC6 MUC2 LOC143666 MUC5AC AP2A2 TOLLIP DRD4 LRRC56 SCT PANO1 TALDO1
nsv1039558	Chr.11:534242 - 672091 on Build GRCh38	Gain	LMNTD2 RASSF7 PHRF1 CDHR5 MIR210HG IRF7 DEAF1 MIR210 LOC143666 HRAS DRD4 LRRC56 SCT
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	LMNTD2 RASSF7 PHRF1 CDHR5 RNH1 PTDSS2 MIR210HG LOC101059906 IRF7 DEAF1 MIR210 LOC143666 HRAS DRD4 LRRC56 SCT
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	CHID1 PIDD1 LMNTD2 RASSF7 SIGIRR PHRF1 PTDSS2 MIR210HG B4GALNT4 LOC101059906 IRF7 RPLP2 DEAF1 TSPAN4 MIR210 LOC171391 CRACR2B EPS8L2 HRAS PNPLA2 CEND1 PKP3 ANO9 PDDC1 SLC25A22 CD151 TMEM80 CDHR5 RNH1 SNORA52 POLR2L LOC143666 AP2A2 DRD4 LRRC56 SCT PANO1 TALDO1
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	CHID1 PIDD1 LMNTD2 RASSF7 PHRF1 PTDSS2 MIR210HG LOC101059906 IRF7 RPLP2 DEAF1 TSPAN4 MIR210 LOC171391 CRACR2B EPS8L2 HRAS PNPLA2 CEND1 PDDC1 SLC25A22 CD151 TMEM80 CDHR5 RNH1 SNORA52 POLR2L LOC143666 DRD4 LRRC56 SCT PANO1 TALDO1
nsv552855	Chr.11:532923 - 545087 on Build GRCh38	Loss	HRAS LRRC56

More Information

Additional Information:

For this assay, SNP(s) [rs112687793] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation