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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89761526 on build GRCh38
Cytoband
16q24.3
Assay ID Hs03921368_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Intron 30
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
XM_017023045.1 XP_016878534.1
AK299282.1
AK301168.1
X99226.1 CAA67610.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv573744 Chr.16:89738447 - 89915950 on Build GRCh38 Loss LOC107984817 TCF25 LOC105371419 SPIRE2 FANCA ZNF276
nsv573743 Chr.16:89664419 - 89853617 on Build GRCh38 Gain VPS9D1 LOC107984817 SPATA2L CDK10 LOC105371419 SPIRE2 FANCA VPS9D1-AS1 SPATA33 ZNF276
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss VPS9D1 LOC107984817 SPATA2L TCF25 TUBB3 SPIRE2 FANCA DPEP1 VPS9D1-AS1 SPATA33 GAS8-AS1 CENPBD1 AFG3L1P GAS8 CDK10 LOC105371419 CHMP1A DEF8 DBNDD1 MC1R ZNF276
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss TUBB8P7 RPL13 SNORD68 ANKRD11 DPEP1 FAM157C VPS9D1-AS1 GAS8-AS1 CENPBD1 LOC101927817 GAS8 CDK10 CHMP1A LOC100287036 DEF8 MC1R ZNF276 VPS9D1 LOC107984817 SPATA2L TCF25 TUBB3 SPIRE2 FANCA SPATA33 CPNE7 ZNF778 AFG3L1P SPG7 LOC105371419 URAHP PRDM7 DBNDD1 LOC105371414
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss LOC107984817 LOC105371419 SPIRE2 FANCA ZNF276
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss RPL13 CDH15 IL17C ANKRD11 FAM157C RNF166 LOC107987238 LOC101927817 LOC100289580 MVD GAS8 CDK10 LOC100287036 MC1R ZNF276 LOC100129697 VPS9D1 SPATA2L CYBA TCF25 CBFA2T3 SPIRE2 FANCA SPATA33 CPNE7 AFG3L1P SPG7 SNAI3 LOC105371419 SNAI3-AS1 CDT1 DBNDD1 LOC105371414 SLC22A31 TUBB8P7 SNORD68 MIR4722 DPEP1 VPS9D1-AS1 GAS8-AS1 CENPBD1 PIEZO1 LOC339059 LOC101927793 CTU2 ACSF3 CHMP1A DEF8 LOC400558 LOC107984817 APRT TUBB3 TRAPPC2L ZNF778 PABPN1L LINC00304 URAHP PRDM7 LOC105371409 GALNS
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion VPS9D1 RPL13 SPATA2L SNORD68 FANCA DPEP1 VPS9D1-AS1 SPATA33 CPNE7 SPG7 CDK10 CHMP1A ZNF276

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