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See other ABCA3 CNV Assays ›
Gene Symbol
ABCA3
Assay Reference Genome
Location

Chr.16:2277036 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03930114_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 21

Gene Name:

 ATP binding cassette subfamily A member 3

Gene Aliases:

 ABC-C, ABC3, EST111653, LBM180, SMDP3

Location:

 Chr.16:2275878-2340746 on Build GRCh38

Assay Gene Location:

 Within Intron 32
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCA3 NM_001089.2 NP_001080.2
AB070929.1 BAB86781.1
AB210044.1 BAE06126.1
BC140895.1
BC146866.1
BC151840.1
U78735.1 AAC50967.1
X97187.1 CAA65825.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication LOC100287175 DECR2 RAB40C FAHD1 C16orf59 NHLRC4 LOC107984876 TSC2 IGFALS TPSB2 MEIOB JMJD8 LOC100134368 FAM234A POLR3K MIR3677 HS3ST6 NARFL ZNF598 LOC652276 SNORA64 STUB1 LMF1 RNPS1 PRR25 MIR6859-4 FBXL16 RGS11 LOC105371045 TMEM204 LOC105371049 RHOT2 LOC105371046 E4F1 MAPK8IP3 LOC106660606 TSR3 RPS2 SNHG9 MIR6511B1 KCTD5 ABCA17P PKD1 WFIKKN1 NTN3 RPUSD1 HAGHL NME3 GNPTG WDR90 SNORA78 DDX11L10 MIR5587 MIR3180-5 LINC00254 ERVK13-1 WDR24 SYNGR3 METTL26 HBZ TBL3 TPSAB1 ECI1 TPSD1 BAIAP3 SOX8 SNORD60 MIR6768 NOXO1 FAM173A MIR4717 BRICD5 NDUFB10 NPW FLJ42627 LMF1-AS1 NME4 NPRL3 ABCA3 TBC1D24 RNF151 CCDC78 C16orf91 CRAMP1 RPL23AP5 CLCN7 LOC101929280 GNG13 CACNA1H CCNF AXIN1 PTX4 MSRB1 PGP RPL3L CASKIN1 WASIR2 MIR662 C1QTNF8 PDIA2 NUBP2 LOC729652 SNRNP25 UBE2I HBM UNKL SLC9A3R2 RHBDL1 HBQ1 HBA1 RAB11FIP3 ARHGDIG MIR3176 PRSS27 RAB26 SSTR5-AS1 MIR3177 TMEM8A TELO2 MIR6767 MRPS34 HAGH PRSS29P SPSB3 MIR940 MSLN ATP6V0C MIR3178 CCDC154 LUC7L MIR4516 MIR1225 LOC107987233 LOC105371184 LOC105371047 LOC105371038 CAPN15 MLST8 SNHG19 PDPK1 CHTF18 MRPL28 EME2 IFT140 CEMP1 NTHL1 PRR35 SSTR5 LINC00235 GFER TRAF7 MCRIP2 AMDHD2 SNORA10 RHBDF1 HBA2 METRN HN1L TPSG1 PIGQ MPG DNASE1L2
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss MIR4516 MIR3180-5 MIR1225 TSC2 MLST8 SNHG19 SYNGR3 PGP CASKIN1 MIR3677 ZNF598 TBL3 SLC9A3R2 NTHL1 RNPS1 ECI1 RAB26 SNORD60 GFER TRAF7 LOC105371049 NOXO1 E4F1 MIR4717 BRICD5 LOC106660606 MIR6511B1 NPW PKD1 ABCA3 DNASE1L2 MIR940
nsv571201 Chr.16:2255538 - 2365929 on Build GRCh38 Loss ABCA17P MIR3677 ABCA3 RNPS1 MIR4717 MIR940 LOC106660606
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain ATP6V0C MIR3178 C16orf59 MIR4516 MIR3180-5 MIR1225 CCNF TSC2 MLST8 SNHG19 PGP CASKIN1 PDPK1 MIR3677 LOC729652 LOC652276 CEMP1 RNPS1 ECI1 RAB26 SNORD60 TRAF7 LOC105371049 MIR6768 AMDHD2 E4F1 MIR6767 MIR4717 BRICD5 LOC106660606 MIR6511B1 ABCA17P PKD1 ABCA3 NTN3 DNASE1L2 TBC1D24 MIR940
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion RAB26 SNORD60 TRAF7 E4F1 MLST8 MIR4717 BRICD5 LOC106660606 SNHG19 PGP CASKIN1 MIR3677 ABCA3 DNASE1L2 RNPS1 MIR940 ECI1

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