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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2181064 on build GRCh38
Cytoband
16p13.3
Assay ID Hs03931012_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Exon 18
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 18 2336 NP_065815.1
AB037727.1 10 1473 BAA92544.1
AF451977.1 18 2402 AAL49758.1
BC042011.1 9 1355 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication LOC105371047 TSR3 LOC729652 MRPL28 ERVK13-1 WASIR2 SPSB3 MIR3176 MCRIP2 HBM CRAMP1 HBA1 STUB1 LOC107987233 TMEM8A LOC100287175 RAB11FIP3 HN1L SNHG9 TBC1D24 RPL3L METRN CEMP1 CASKIN1 MIR5587 SNRNP25 POLR3K LOC105371184 IGFALS MAPK8IP3 HAGH MIR940 LOC100134368 PKD1 MIR3677 CCDC78 ARHGDIG ATP6V0C LOC105371049 MIR1225 NPW LINC00254 MIR6768 RHOT2 MSRB1 HAGHL FBXL16 CLCN7 ZNF598 IFT140 SLC9A3R2 WDR24 PRSS29P PGP SYNGR3 SNORA10 KCTD5 MPG BAIAP3 PRR25 TPSB2 MRPS34 UNKL NPRL3 MIR662 PTX4 NARFL GNPTG CHTF18 AMDHD2 TPSD1 RAB26 JMJD8 BRICD5 PIGQ GNG13 MSLN LINC00235 NHLRC4 PDIA2 LOC105371045 RGS11 TPSAB1 LMF1 MLST8 SSTR5 LOC105371046 CAPN15 MIR3180-5 METTL26 NDUFB10 MIR3178 TRAF7 CCDC154 ECI1 LOC652276 CCNF RPS2 PRSS27 HS3ST6 NME4 LOC106660606 EME2 C16orf91 NUBP2 PRR35 FAM234A NME3 DNASE1L2 RNPS1 SNORD60 CACNA1H AXIN1 FLJ42627 MIR4717 C1QTNF8 E4F1 GFER WDR90 LOC105371038 LMF1-AS1 DDX11L10 RNF151 SNORA64 NTN3 TMEM204 NTHL1 MIR3177 RHBDF1 RPL23AP5 SSTR5-AS1 TSC2 SNORA78 FAHD1 UBE2I PDPK1 TBL3 HBZ WFIKKN1 DECR2 LUC7L TELO2 HBA2 ABCA3 MIR6767 MIR6511B1 C16orf59 HBQ1 RPUSD1 MIR4516 FAM173A SOX8 RAB40C MIR6859-4 RHBDL1 TPSG1 ABCA17P LOC101929280 MEIOB LOC107984876 SNHG19 NOXO1
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss BRICD5 SNORD60 LOC105371049 MIR1225 NPW MIR4717 E4F1 GFER NTHL1 ZNF598 SLC9A3R2 TSC2 MLST8 PGP SYNGR3 MIR3180-5 TBL3 TRAF7 ABCA3 MIR6511B1 ECI1 MIR4516 CASKIN1 LOC106660606 MIR940 PKD1 SNHG19 MIR3677 NOXO1 RAB26 DNASE1L2 RNPS1
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss MIR3180-5 BRICD5 SNORD60 LOC105371049 TRAF7 MIR6511B1 MIR1225 ECI1 MIR4516 CASKIN1 E4F1 PKD1 SNHG19 TSC2 MLST8 RAB26 DNASE1L2 PGP
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss BRICD5 SNORD60 TRAF7 ECI1 CASKIN1 E4F1 LOC106660606 MIR940 SNHG19 MIR3677 MLST8 RAB26 DNASE1L2 RNPS1 PGP
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss MIR3180-5 SNORD60 LOC105371049 TRAF7 MIR6511B1 MIR1225 PKD1 MIR4516 SNHG19 CASKIN1 TSC2 RAB26
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain TRAF7 CASKIN1
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss BRICD5 LOC106660606 MIR940 TRAF7 ECI1 MIR3677 CASKIN1 MLST8 E4F1 DNASE1L2 RNPS1 PGP
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain LOC729652 BRICD5 SNORD60 LOC105371049 MIR1225 MIR4717 E4F1 MIR6768 NTN3 TSC2 MLST8 PGP PDPK1 MIR3180-5 TBC1D24 MIR3178 TRAF7 ABCA3 MIR6767 MIR6511B1 C16orf59 ECI1 LOC652276 CCNF MIR4516 CEMP1 CASKIN1 LOC106660606 ABCA17P MIR940 AMDHD2 PKD1 SNHG19 MIR3677 RAB26 DNASE1L2 RNPS1 ATP6V0C
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion BRICD5 SNORD60 TRAF7 ABCA3 ECI1 MIR4717 CASKIN1 E4F1 LOC106660606 MIR940 SNHG19 MIR3677 MLST8 RAB26 DNASE1L2 RNPS1 PGP

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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