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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89759862 on build GRCh38
Cytoband
16q24.3
Assay ID Hs03937406_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Intron 30
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
XM_017023045.1 XP_016878534.1
AK299282.1
AK301168.1
X99226.1 CAA67610.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv573744 Chr.16:89738447 - 89915950 on Build GRCh38 Loss LOC105371419 LOC107984817 ZNF276 FANCA SPIRE2 TCF25
nsv573743 Chr.16:89664419 - 89853617 on Build GRCh38 Gain SPATA2L LOC105371419 VPS9D1 CDK10 SPATA33 LOC107984817 ZNF276 FANCA VPS9D1-AS1 SPIRE2
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss SPATA2L DEF8 LOC105371419 CENPBD1 GAS8-AS1 CHMP1A LOC107984817 ZNF276 FANCA VPS9D1-AS1 SPIRE2 DBNDD1 DPEP1 TCF25 MC1R VPS9D1 CDK10 AFG3L1P SPATA33 TUBB3 GAS8
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss FAM157C DEF8 PRDM7 ANKRD11 SPG7 CENPBD1 ZNF778 SPIRE2 DBNDD1 DPEP1 TCF25 MC1R LOC100287036 VPS9D1 CDK10 AFG3L1P LOC105371414 LOC101927817 SNORD68 SPATA2L LOC105371419 CPNE7 GAS8-AS1 CHMP1A LOC107984817 ZNF276 FANCA VPS9D1-AS1 URAHP TUBB8P7 SPATA33 TUBB3 GAS8 RPL13
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss LOC105371419 LOC107984817 ZNF276 FANCA SPIRE2
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss DEF8 PRDM7 LOC107987238 SNAI3-AS1 LOC105371409 ZNF778 SPIRE2 DPEP1 CYBA SLC22A31 SNORD68 LOC400558 SPATA2L PABPN1L CPNE7 CDT1 SNAI3 GAS8-AS1 IL17C LOC101927793 GALNS URAHP CBFA2T3 TUBB3 GAS8 FAM157C ANKRD11 SPG7 CENPBD1 DBNDD1 CTU2 MVD LOC100129697 TCF25 APRT MC1R LOC100287036 VPS9D1 CDK10 AFG3L1P LOC105371414 LOC101927817 PIEZO1 ACSF3 TRAPPC2L LOC105371419 CHMP1A LOC107984817 LOC100289580 ZNF276 FANCA VPS9D1-AS1 LINC00304 TUBB8P7 SPATA33 RNF166 CDH15 LOC339059 MIR4722 RPL13
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion SPATA2L CPNE7 SPG7 CHMP1A ZNF276 FANCA VPS9D1-AS1 DPEP1 VPS9D1 CDK10 SPATA33 SNORD68 RPL13

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