Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	54715
Gene Name:	RNA binding protein, fox-1 homolog 1
Gene Aliases:	2BP1, A2BP1, FOX-1, FOX1, HRNBP1
Location:	Chr.16:5239749-7713343 on Build GRCh38
Assay Gene Location:	Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
RBFOX1	XM_017023319.1			XP_016878808.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1035156	Chr.16:5091032 - 5996934 on Build GRCh38	Gain	LINC01570 RBFOX1 EEF2KMT MIR8065
nsv1046986	Chr.16:4049000 - 5555721 on Build GRCh38	Gain	SRL SMIM22 C16orf89 DNAJA3 LINC01569 C16orf96 HMOX2 ANKS3 EEF2KMT SEC14L5 MIR6769A CORO7-PAM16 ALG1 PPL NAGPA UBALD1 NAGPA-AS1 SEPT12 CDIP1 ROGDI RBFOX1 VASN MGRN1 GLIS2-AS1 CORO7 LOC105371063 GLYR1 NMRAL1 C16orf71 GLIS2 UBN1 ADCY9 TFAP4 NUDT16L1 PAM16 ZNF500
nsv1045304	Chr.16:5205761 - 5326875 on Build GRCh38	Loss	RBFOX1
dgv2698n100	Chr.16:5304641 - 5327717 on Build GRCh38	Loss	RBFOX1
nsv1036241	Chr.16:5271882 - 5387609 on Build GRCh38	Loss	RBFOX1
esv34300	Chr.16:5005938 - 5322534 on Build GRCh38	Gain	NAGPA-AS1 RBFOX1 EEF2KMT SEC14L5 C16orf89 ALG1 NAGPA
esv2760069	Chr.16:4922849 - 5374828 on Build GRCh38	Gain+Loss	NAGPA-AS1 RBFOX1 EEF2KMT SEC14L5 C16orf89 ALG1 PPL NAGPA
nsv428318	Chr.16:5011594 - 5374828 on Build GRCh38	Gain	NAGPA-AS1 RBFOX1 EEF2KMT SEC14L5 C16orf89 ALG1 NAGPA
esv2762021	Chr.16:5293419 - 5377238 on Build GRCh38	Loss	RBFOX1
nsv1037303	Chr.16:5287645 - 5327595 on Build GRCh38	Loss	RBFOX1

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More Information

Additional Information:

For this assay, SNP(s) [rs75744218,rs78251475] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.